Strain Fitness in Escherichia coli ECRC100 around OKFHMN_28520

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntychO and narX are separated by 0 nucleotidesnarX and narX overlap by 8 nucleotides OKFHMN_28515: ychO - inverse autotransporter invasin YchO, at 5,467,711 to 5,469,141 ychO OKFHMN_28520: narX - nitrate/nitrite two-component system sensor histidine kinase NarX, at 5,469,142 to 5,469,792 narX OKFHMN_28525: narX - nitrate/nitrite two-component system sensor histidine kinase NarX, at 5,469,785 to 5,471,581 narX Position (kb) 5469 5470Strain fitness (log2 ratio) -1 0 1 2at 5468.269 kb on + strand, within ychOat 5469.403 kb on + strand, within narXat 5470.058 kb on - strand, within narXat 5470.168 kb on - strand, within narXat 5470.568 kb on - strand, within narX

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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5,468,269 + ychO OKFHMN_28515 0.39 -0.2
5,469,403 + narX OKFHMN_28520 0.40 +2.6
5,470,058 - narX OKFHMN_28525 0.15 +0.8
5,470,168 - narX OKFHMN_28525 0.21 -0.2
5,470,568 - narX OKFHMN_28525 0.44 +0.9

Or see this region's nucleotide sequence