Strain Fitness in Escherichia coli ECRC100 around OKFHMN_28345

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttnp-IS3 and ycgR are separated by 51 nucleotidesycgR and ymgE are separated by 200 nucleotidesymgE and fepA are separated by 49 nucleotides OKFHMN_28335: tnp-IS3 - IS3 family transposase, at 5,435,011 to 5,435,337 tnp-IS3 OKFHMN_28340: ycgR - Flagellar brake protein YcgR, at 5,435,389 to 5,435,985 ycgR OKFHMN_28345: ymgE - UPF0410 protein YmgE, at 5,436,186 to 5,436,440 ymgE OKFHMN_28350: fepA - TonB-dependent receptor, at 5,436,490 to 5,438,460 fepA Position (kb) 5436 5437Strain fitness (log2 ratio) -1 0 1at 5436.501 kb on - strandat 5436.611 kb on - strandat 5436.795 kb on + strand, within fepAat 5437.102 kb on - strand, within fepAat 5437.267 kb on + strand, within fepAat 5437.267 kb on + strand, within fepA

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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5,436,501 - +1.1
5,436,611 - -0.3
5,436,795 + fepA OKFHMN_28350 0.15 -0.2
5,437,102 - fepA OKFHMN_28350 0.31 -0.6
5,437,267 + fepA OKFHMN_28350 0.39 -0.8
5,437,267 + fepA OKFHMN_28350 0.39 +0.5

Or see this region's nucleotide sequence