Strain Fitness in Escherichia coli ECRC100 around OKFHMN_28170

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttfaX and tnpB are separated by 75 nucleotidestnpB and tnpB overlap by 4 nucleotidestnpB and OKFHMN_28170 are separated by 49 nucleotidesOKFHMN_28170 and menH are separated by 302 nucleotides OKFHMN_28155: tfaX - Protein TfaX, at 5,403,868 to 5,404,116 tfaX OKFHMN_28160: tnpB - IS66 family insertion sequence element accessory protein TnpB, at 5,404,192 to 5,404,572 tnpB OKFHMN_28165: tnpB - IS66 family insertion sequence element accessory protein TnpB, at 5,404,569 to 5,404,916 tnpB OKFHMN_28170: OKFHMN_28170 - IS66-like element ISEc8 family transposase, at 5,404,966 to 5,406,504 _28170 OKFHMN_28175: menH - alpha/beta hydrolase, at 5,406,807 to 5,408,291 menH Position (kb) 5404 5405 5406 5407Strain fitness (log2 ratio) -1 0 1at 5407.013 kb on - strand, within menHat 5407.440 kb on + strand, within menH

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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5,407,013 - menH OKFHMN_28175 0.14 +1.5
5,407,440 + menH OKFHMN_28175 0.43 +0.1

Or see this region's nucleotide sequence