Strain Fitness in Escherichia coli ECRC100 around OKFHMN_26980

Experiment: Casamino-acids

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntchbA and chbR are separated by 10 nucleotideschbR and celF are separated by 105 nucleotidescelF and chbG are separated by 12 nucleotideschbG and katE are separated by 46 nucleotides OKFHMN_26970: chbA - PTS N,N'-diacetylchitobiose transporter subunit IIA, at 5,191,103 to 5,191,453 chbA OKFHMN_26975: chbR - transcriptional regulator ChbR, at 5,191,464 to 5,192,303 chbR OKFHMN_26980: celF - 6-phospho-beta-glucosidase, at 5,192,409 to 5,193,761 celF OKFHMN_26985: chbG - chitin disaccharide deacetylase, at 5,193,774 to 5,194,532 chbG OKFHMN_26990: katE - catalase HPII, at 5,194,579 to 5,196,840 katE Position (kb) 5192 5193 5194Strain fitness (log2 ratio) -3 -2 -1 0 1at 5192.043 kb on - strand, within chbRat 5192.925 kb on - strand, within celFat 5193.422 kb on + strand, within celFat 5194.114 kb on + strand, within chbGat 5194.160 kb on + strand, within chbGat 5194.160 kb on + strand, within chbGat 5194.535 kb on - strandat 5194.543 kb on - strandat 5194.603 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
remove
5,192,043 - chbR OKFHMN_26975 0.69 -3.4
5,192,925 - celF OKFHMN_26980 0.38 +0.6
5,193,422 + celF OKFHMN_26980 0.75 -0.8
5,194,114 + chbG OKFHMN_26985 0.45 +0.5
5,194,160 + chbG OKFHMN_26985 0.51 +0.3
5,194,160 + chbG OKFHMN_26985 0.51 -0.4
5,194,535 - -0.8
5,194,543 - +0.6
5,194,603 - +0.9

Or see this region's nucleotide sequence