Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_25980 and OKFHMN_25985 are separated by 10 nucleotides OKFHMN_25985 and OKFHMN_25990 are separated by 21 nucleotides OKFHMN_25990 and OKFHMN_25995 are separated by 298 nucleotides OKFHMN_25995 and OKFHMN_26000 are separated by 15 nucleotides OKFHMN_26000 and OKFHMN_26005 are separated by 29 nucleotides
OKFHMN_25980: OKFHMN_25980 - hypothetical protein, at 5,012,360 to 5,012,638
_25980
OKFHMN_25985: OKFHMN_25985 - DUF4761 domain-containing protein, at 5,012,649 to 5,012,999
_25985
OKFHMN_25990: OKFHMN_25990 - DNA-binding protein, at 5,013,021 to 5,013,224
_25990
OKFHMN_25995: OKFHMN_25995 - transcriptional regulator, at 5,013,523 to 5,013,927
_25995
OKFHMN_26000: OKFHMN_26000 - Putative transmembrane protein, at 5,013,943 to 5,014,593
_26000
OKFHMN_26005: OKFHMN_26005 - DUF2511 domain-containing protein, at 5,014,623 to 5,014,970
_26005
Position (kb) 5013
5014 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5012.913 kb on - strand, within OKFHMN_25985 at 5012.941 kb on - strand, within OKFHMN_25985 at 5012.981 kb on + strand at 5013.022 kb on + strand at 5013.137 kb on + strand, within OKFHMN_25990 at 5013.138 kb on - strand, within OKFHMN_25990 at 5013.140 kb on + strand, within OKFHMN_25990 at 5013.140 kb on + strand, within OKFHMN_25990 at 5013.150 kb on - strand, within OKFHMN_25990 at 5013.166 kb on + strand, within OKFHMN_25990 at 5013.180 kb on + strand, within OKFHMN_25990 at 5013.271 kb on + strand at 5013.453 kb on + strand at 5013.454 kb on - strand at 5013.454 kb on - strand at 5013.454 kb on - strand at 5013.469 kb on - strand at 5013.879 kb on + strand, within OKFHMN_25995 at 5013.931 kb on + strand at 5014.209 kb on + strand, within OKFHMN_26000 at 5014.307 kb on + strand, within OKFHMN_26000 at 5014.597 kb on + strand at 5014.622 kb on + strand at 5014.703 kb on + strand, within OKFHMN_26005 at 5014.782 kb on + strand, within OKFHMN_26005 at 5014.871 kb on + strand, within OKFHMN_26005
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 5,012,913 - OKFHMN_25985 0.75 -1.0 5,012,941 - OKFHMN_25985 0.83 +1.7 5,012,981 + -0.5 5,013,022 + -1.3 5,013,137 + OKFHMN_25990 0.57 -0.3 5,013,138 - OKFHMN_25990 0.57 +0.4 5,013,140 + OKFHMN_25990 0.58 -0.2 5,013,140 + OKFHMN_25990 0.58 -0.1 5,013,150 - OKFHMN_25990 0.63 +0.9 5,013,166 + OKFHMN_25990 0.71 +0.3 5,013,180 + OKFHMN_25990 0.78 -0.2 5,013,271 + -0.1 5,013,453 + +1.1 5,013,454 - +0.5 5,013,454 - +0.5 5,013,454 - +0.0 5,013,469 - -1.1 5,013,879 + OKFHMN_25995 0.88 -0.1 5,013,931 + +0.5 5,014,209 + OKFHMN_26000 0.41 +0.1 5,014,307 + OKFHMN_26000 0.56 -0.1 5,014,597 + +2.1 5,014,622 + -0.3 5,014,703 + OKFHMN_26005 0.23 -2.4 5,014,782 + OKFHMN_26005 0.46 -0.1 5,014,871 + OKFHMN_26005 0.71 +0.3
Or see this region's nucleotide sequence