Strain Fitness in Escherichia coli ECRC100 around OKFHMN_25390

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttnp-IS3 and OKFHMN_25380 are separated by 319 nucleotidesOKFHMN_25380 and OKFHMN_25385 are separated by 4 nucleotidesOKFHMN_25385 and OKFHMN_25390 are separated by 50 nucleotidesOKFHMN_25390 and OKFHMN_25395 are separated by 155 nucleotidesOKFHMN_25395 and OKFHMN_25400 are separated by 12 nucleotidesOKFHMN_25400 and OKFHMN_25405 are separated by 7 nucleotides OKFHMN_25375: tnp-IS3 - IS3 family transposase, at 4,917,268 to 4,917,594 tnp-IS3 OKFHMN_25380: OKFHMN_25380 - lysis protein, at 4,917,914 to 4,918,120 _25380 OKFHMN_25385: OKFHMN_25385 - DUF1327 domain-containing protein, at 4,918,125 to 4,918,469 _25385 OKFHMN_25390: OKFHMN_25390 - SAR-endolysin, at 4,918,520 to 4,919,053 _25390 OKFHMN_25395: OKFHMN_25395 - hypothetical protein, at 4,919,209 to 4,919,391 _25395 OKFHMN_25400: OKFHMN_25400 - hypothetical protein, at 4,919,404 to 4,919,535 _25400 OKFHMN_25405: OKFHMN_25405 - lysis protein, at 4,919,543 to 4,920,010 _25405 Position (kb) 4918 4919 4920Strain fitness (log2 ratio) -2 -1 0 1 2at 4917.665 kb on + strandat 4917.683 kb on + strandat 4917.683 kb on + strandat 4917.688 kb on - strandat 4917.688 kb on - strandat 4917.688 kb on - strandat 4917.689 kb on + strandat 4917.736 kb on + strandat 4918.699 kb on + strand, within OKFHMN_25390at 4919.143 kb on - strandat 4919.218 kb on + strandat 4919.218 kb on + strandat 4919.244 kb on + strand, within OKFHMN_25395at 4919.569 kb on + strandat 4919.696 kb on - strand, within OKFHMN_25405

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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4,917,665 + +0.3
4,917,683 + +1.0
4,917,683 + -0.5
4,917,688 - -0.3
4,917,688 - +2.0
4,917,688 - -2.4
4,917,689 + +1.3
4,917,736 + +0.9
4,918,699 + OKFHMN_25390 0.34 -0.5
4,919,143 - +0.3
4,919,218 + -0.2
4,919,218 + -0.6
4,919,244 + OKFHMN_25395 0.19 +0.5
4,919,569 + +0.9
4,919,696 - OKFHMN_25405 0.33 +0.5

Or see this region's nucleotide sequence