Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tra8 and OKFHMN_21000 are separated by 190 nucleotides OKFHMN_21000 and OKFHMN_21005 overlap by 8 nucleotides OKFHMN_21005 and OKFHMN_21010 overlap by 26 nucleotides OKFHMN_21010 and OKFHMN_21015 overlap by 4 nucleotides OKFHMN_21015 and OKFHMN_21020 overlap by 4 nucleotides
OKFHMN_20995: tra8 - IS30 family transposase, at 4,083,328 to 4,084,083
tra8
OKFHMN_21000: OKFHMN_21000 - hypothetical protein, at 4,084,274 to 4,084,390
_21000
OKFHMN_21005: OKFHMN_21005 - endonuclease, at 4,084,383 to 4,084,949
_21005
OKFHMN_21010: OKFHMN_21010 - protein NinG, at 4,084,924 to 4,085,535
_21010
OKFHMN_21015: OKFHMN_21015 - Serine/threonine-protein phosphatase, at 4,085,532 to 4,086,197
_21015
OKFHMN_21020: OKFHMN_21020 - Antitermination protein Q, at 4,086,194 to 4,086,817
_21020
Position (kb) 4084
4085
4086 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4084.185 kb on - strand at 4084.282 kb on - strand at 4084.436 kb on + strand at 4084.472 kb on + strand, within OKFHMN_21005 at 4084.584 kb on + strand, within OKFHMN_21005 at 4084.586 kb on + strand, within OKFHMN_21005 at 4084.722 kb on - strand, within OKFHMN_21005 at 4084.861 kb on + strand, within OKFHMN_21005 at 4084.887 kb on + strand, within OKFHMN_21005 at 4084.890 kb on + strand, within OKFHMN_21005 at 4086.355 kb on + strand, within OKFHMN_21020 at 4086.391 kb on + strand, within OKFHMN_21020 at 4086.435 kb on - strand, within OKFHMN_21020 at 4086.466 kb on + strand, within OKFHMN_21020 at 4086.478 kb on - strand, within OKFHMN_21020
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 4,084,185 - -1.1 4,084,282 - +0.6 4,084,436 + +0.0 4,084,472 + OKFHMN_21005 0.16 +2.3 4,084,584 + OKFHMN_21005 0.35 -1.1 4,084,586 + OKFHMN_21005 0.36 +0.2 4,084,722 - OKFHMN_21005 0.60 +0.3 4,084,861 + OKFHMN_21005 0.84 +0.1 4,084,887 + OKFHMN_21005 0.89 +1.4 4,084,890 + OKFHMN_21005 0.89 +0.8 4,086,355 + OKFHMN_21020 0.26 +0.2 4,086,391 + OKFHMN_21020 0.32 -1.8 4,086,435 - OKFHMN_21020 0.39 +0.2 4,086,466 + OKFHMN_21020 0.44 +1.6 4,086,478 - OKFHMN_21020 0.46 +0.5
Or see this region's nucleotide sequence