Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_20970 and OKFHMN_20975 are separated by 0 nucleotides OKFHMN_20975 and OKFHMN_20980 are separated by 97 nucleotides OKFHMN_20980 and OKFHMN_20985 are separated by 395 nucleotides
OKFHMN_20970: OKFHMN_20970 - DNA-binding protein, at 4,078,775 to 4,080,406
_20970
OKFHMN_20975: OKFHMN_20975 - hypothetical protein, at 4,080,407 to 4,080,805
_20975
OKFHMN_20980: OKFHMN_20980 - hypothetical protein, at 4,080,903 to 4,081,316
_20980
OKFHMN_20985: OKFHMN_20985 - Procyclic acidic repetitive protein (PARP), at 4,081,712 to 4,082,914
_20985
Position (kb) 4080
4081 Strain fitness (log2 ratio) -1
0
1 at 4079.413 kb on - strand, within OKFHMN_20970 at 4079.413 kb on - strand, within OKFHMN_20970 at 4080.037 kb on + strand, within OKFHMN_20970 at 4080.184 kb on + strand, within OKFHMN_20970 at 4080.199 kb on - strand, within OKFHMN_20970 at 4080.549 kb on + strand, within OKFHMN_20975 at 4080.612 kb on + strand, within OKFHMN_20975 at 4080.779 kb on - strand at 4081.117 kb on - strand, within OKFHMN_20980 at 4081.625 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 4,079,413 - OKFHMN_20970 0.39 +0.2 4,079,413 - OKFHMN_20970 0.39 +0.6 4,080,037 + OKFHMN_20970 0.77 +0.1 4,080,184 + OKFHMN_20970 0.86 +0.0 4,080,199 - OKFHMN_20970 0.87 +0.8 4,080,549 + OKFHMN_20975 0.36 -0.4 4,080,612 + OKFHMN_20975 0.51 +1.7 4,080,779 - +0.8 4,081,117 - OKFHMN_20980 0.52 -0.7 4,081,625 + +0.1
Or see this region's nucleotide sequence