Strain Fitness in Escherichia coli ECRC100 around OKFHMN_20780

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
4,038,881	-	emrB	OKFHMN_20775	0.39	-1.8
4,038,976	-	emrB	OKFHMN_20775	0.45	-0.2
4,038,983	-	emrB	OKFHMN_20775	0.45	-0.9
4,038,984	+	emrB	OKFHMN_20775	0.45	-1.5
4,038,985	-	emrB	OKFHMN_20775	0.45	+0.7
4,038,985	-	emrB	OKFHMN_20775	0.45	+0.5
4,038,998	-	emrB	OKFHMN_20775	0.46	-0.7
4,039,094	-	emrB	OKFHMN_20775	0.52	-1.3
4,039,317	-	emrB	OKFHMN_20775	0.67	+0.3
4,039,336	+	emrB	OKFHMN_20775	0.68	+0.7
4,039,439	-	emrB	OKFHMN_20775	0.75	-0.5
4,039,516	+	emrB	OKFHMN_20775	0.80	+0.6
4,039,516	+	emrB	OKFHMN_20775	0.80	+0.2
4,039,517	-	emrB	OKFHMN_20775	0.80	-1.7
4,039,555	+	emrB	OKFHMN_20775	0.82	+1.7
4,039,861	-				-0.2
4,039,861	-				-0.0
4,039,943	+				+1.4
4,039,943	+				-3.7
4,039,977	-	emrA	OKFHMN_20780	0.12	+0.3
4,039,999	-	emrA	OKFHMN_20780	0.13	-0.9
4,040,085	-	emrA	OKFHMN_20780	0.21	-2.2
4,040,161	+	emrA	OKFHMN_20780	0.27	-0.5
4,040,162	-	emrA	OKFHMN_20780	0.27	+0.0
4,040,220	-	emrA	OKFHMN_20780	0.32	+0.8
4,040,220	-	emrA	OKFHMN_20780	0.32	-0.8
4,040,261	+	emrA	OKFHMN_20780	0.36	+0.5
4,040,261	+	emrA	OKFHMN_20780	0.36	-0.3
4,040,341	+	emrA	OKFHMN_20780	0.43	-0.3
4,040,369	+	emrA	OKFHMN_20780	0.45	-3.2
4,040,441	+	emrA	OKFHMN_20780	0.51	-0.6
4,040,473	+	emrA	OKFHMN_20780	0.54	-0.6
4,040,823	-	emrA	OKFHMN_20780	0.84	-0.2
4,040,848	+	emrA	OKFHMN_20780	0.86	+0.3
4,040,849	-	emrA	OKFHMN_20780	0.86	-0.6
4,040,881	-	emrA	OKFHMN_20780	0.89	-0.3
4,040,920	-				+0.7
4,040,922	-				-1.8
4,041,014	+				+0.9
4,041,015	-				+0.1
4,041,036	-				+0.4
4,041,036	-				+0.3
4,041,109	+				+0.1
4,041,111	+				+0.6
4,041,143	-				-0.1
4,041,273	-	emrR	OKFHMN_20785	0.25	-0.4
4,041,322	-	emrR	OKFHMN_20785	0.34	-0.3
4,041,459	-	emrR	OKFHMN_20785	0.60	+0.8
4,041,459	-	emrR	OKFHMN_20785	0.60	-0.5
4,041,567	-	emrR	OKFHMN_20785	0.80	-0.0
4,041,765	+				+0.5
4,041,765	+				-1.0
4,041,766	-				+0.9
4,041,767	+				+0.9
4,041,978	-	ygaH	OKFHMN_20790	0.64	+0.0
4,041,981	+	ygaH	OKFHMN_20790	0.65	+1.2
4,041,982	-	ygaH	OKFHMN_20790	0.65	+0.3
4,041,982	-	ygaH	OKFHMN_20790	0.65	+0.4