Strain Fitness in Escherichia coli ECRC100 around OKFHMN_18860

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
3,662,180	+				+0.5
3,662,181	-				+0.7
3,662,219	+				+0.2
3,662,219	+				+0.0
3,662,220	-				+0.8
3,662,220	-				-0.9
3,662,221	+				+0.4
3,662,222	-				+0.6
3,662,294	-				+0.9
3,662,353	-	fepB	OKFHMN_18855	0.14	-0.5
3,662,366	-	fepB	OKFHMN_18855	0.15	-0.3
3,662,366	-	fepB	OKFHMN_18855	0.15	+0.3
3,662,521	+	fepB	OKFHMN_18855	0.32	-0.9
3,662,576	-	fepB	OKFHMN_18855	0.37	+0.1
3,662,576	-	fepB	OKFHMN_18855	0.37	+1.5
3,662,578	+	fepB	OKFHMN_18855	0.38	+0.1
3,662,579	-	fepB	OKFHMN_18855	0.38	+0.4
3,662,701	-	fepB	OKFHMN_18855	0.51	+0.5
3,662,714	+	fepB	OKFHMN_18855	0.52	+0.3
3,662,812	+	fepB	OKFHMN_18855	0.62	-0.7
3,662,812	+	fepB	OKFHMN_18855	0.62	-0.9
3,662,813	-	fepB	OKFHMN_18855	0.62	-0.3
3,662,813	-	fepB	OKFHMN_18855	0.62	+0.1
3,662,816	+	fepB	OKFHMN_18855	0.63	-0.1
3,662,816	+	fepB	OKFHMN_18855	0.63	-0.5
3,662,816	+	fepB	OKFHMN_18855	0.63	+0.1
3,662,816	+	fepB	OKFHMN_18855	0.63	+0.5
3,662,816	+	fepB	OKFHMN_18855	0.63	+0.1
3,662,816	+	fepB	OKFHMN_18855	0.63	+0.3
3,662,817	-	fepB	OKFHMN_18855	0.63	+0.1
3,662,817	-	fepB	OKFHMN_18855	0.63	-0.8
3,662,817	-	fepB	OKFHMN_18855	0.63	+0.0
3,662,817	-	fepB	OKFHMN_18855	0.63	+1.0
3,662,839	-	fepB	OKFHMN_18855	0.65	-0.2
3,663,056	+	fepB	OKFHMN_18855	0.88	+0.1
3,663,057	-	fepB	OKFHMN_18855	0.88	-0.4
3,663,195	+				-0.2
3,663,245	+				-1.3
3,663,262	+	rpiR	OKFHMN_18860	0.11	+0.2
3,663,262	+	rpiR	OKFHMN_18860	0.11	-0.9
3,663,263	-	rpiR	OKFHMN_18860	0.11	-0.0
3,663,263	-	rpiR	OKFHMN_18860	0.11	+0.6
3,663,264	+	rpiR	OKFHMN_18860	0.11	+0.4
3,663,264	+	rpiR	OKFHMN_18860	0.11	-0.1
3,663,265	-	rpiR	OKFHMN_18860	0.11	+0.7
3,663,267	+	rpiR	OKFHMN_18860	0.11	-0.5
3,663,356	+	rpiR	OKFHMN_18860	0.21	+1.3
3,663,356	+	rpiR	OKFHMN_18860	0.21	+0.0
3,663,356	+	rpiR	OKFHMN_18860	0.21	-1.4
3,663,427	-	rpiR	OKFHMN_18860	0.29	-1.4
3,663,427	-	rpiR	OKFHMN_18860	0.29	-0.1
3,663,448	-	rpiR	OKFHMN_18860	0.32	+0.6
3,663,477	+	rpiR	OKFHMN_18860	0.35	+0.6
3,663,478	-	rpiR	OKFHMN_18860	0.35	-0.7
3,663,514	+	rpiR	OKFHMN_18860	0.39	+0.2
3,663,514	+	rpiR	OKFHMN_18860	0.39	-2.1
3,663,516	+	rpiR	OKFHMN_18860	0.39	-1.3
3,663,522	+	rpiR	OKFHMN_18860	0.40	+0.7
3,663,523	-	rpiR	OKFHMN_18860	0.40	+0.4
3,663,523	-	rpiR	OKFHMN_18860	0.40	+0.1
3,663,523	-	rpiR	OKFHMN_18860	0.40	-0.0
3,663,581	+	rpiR	OKFHMN_18860	0.47	-0.6
3,663,582	-	rpiR	OKFHMN_18860	0.47	+0.3
3,663,624	+	rpiR	OKFHMN_18860	0.52	+1.0
3,663,662	+	rpiR	OKFHMN_18860	0.56	-1.3
3,663,823	-	rpiR	OKFHMN_18860	0.74	+1.9
3,663,917	+	rpiR	OKFHMN_18860	0.85	+1.0
3,663,929	+	rpiR	OKFHMN_18860	0.86	+0.0
3,664,100	-				+1.4
3,664,100	-				-0.8
3,664,118	+				-2.6
3,664,124	+				+0.1
3,664,150	-	ygiN	OKFHMN_18865	0.17	+0.1
3,664,161	-	ygiN	OKFHMN_18865	0.20	+0.5
3,664,162	+	ygiN	OKFHMN_18865	0.20	+1.0
3,664,295	-	ygiN	OKFHMN_18865	0.63	+0.1
3,664,295	-	ygiN	OKFHMN_18865	0.63	+0.3
3,664,320	+	ygiN	OKFHMN_18865	0.70	-0.2
3,664,401	+				+0.1
3,664,402	-				+0.3
3,664,407	-				-0.3
3,664,407	-				+0.2
3,664,426	+				+0.0
3,664,427	-				+0.0
3,664,441	-				+0.3
3,664,445	-				+0.2
3,664,484	+				-0.0
3,664,485	-				+0.6
3,664,485	-				+0.5
3,664,527	-	mdaB	OKFHMN_18870	0.14	+0.2
3,664,582	+	mdaB	OKFHMN_18870	0.24	+0.4
3,664,583	-	mdaB	OKFHMN_18870	0.24	-0.3
3,664,667	+	mdaB	OKFHMN_18870	0.38	+0.2
3,664,771	-	mdaB	OKFHMN_18870	0.56	-1.0
3,664,771	-	mdaB	OKFHMN_18870	0.56	-2.1
3,664,883	-	mdaB	OKFHMN_18870	0.76	-0.2