Strain Fitness in Escherichia coli ECRC100 around OKFHMN_18230

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
3,537,492	-				-1.7
3,537,492	-				-0.5
3,537,492	-				+0.4
3,537,492	-				-2.4
3,537,500	+				-0.5
3,537,564	+	diaA	OKFHMN_18220	0.11	+0.3
3,537,681	+	diaA	OKFHMN_18220	0.31	+0.2
3,537,754	+	diaA	OKFHMN_18220	0.43	-0.2
3,537,755	-	diaA	OKFHMN_18220	0.43	+0.2
3,537,755	-	diaA	OKFHMN_18220	0.43	-0.2
3,537,755	-	diaA	OKFHMN_18220	0.43	+0.4
3,537,755	-	diaA	OKFHMN_18220	0.43	-0.1
3,537,755	-	diaA	OKFHMN_18220	0.43	-0.3
3,537,794	+	diaA	OKFHMN_18220	0.50	-0.0
3,537,808	+	diaA	OKFHMN_18220	0.52	-0.6
3,537,868	+	diaA	OKFHMN_18220	0.62	+0.7
3,538,092	+				-1.2
3,538,107	-				-0.4
3,538,111	-				-1.6
3,538,129	+				+0.9
3,538,130	-				+0.5
3,538,136	-				-0.3
3,538,167	-	yraN	OKFHMN_18225	0.15	+0.2
3,538,430	+	yraN	OKFHMN_18225	0.81	+0.0
3,538,430	+	yraN	OKFHMN_18225	0.81	-1.0
3,538,431	-	yraN	OKFHMN_18225	0.81	-0.1
3,538,431	-	yraN	OKFHMN_18225	0.81	+0.6
3,538,463	+				+0.5
3,538,477	+				+0.1
3,538,494	-				+0.3
3,538,498	+				-0.5
3,538,498	+				-0.1
3,538,498	+				+0.3
3,538,499	-				-0.7
3,538,499	-				-2.3
3,538,507	+				+1.8
3,538,508	-				-0.4
3,538,518	+				-0.5
3,538,554	+				+1.6
3,538,557	+				-0.3
3,538,557	+				-0.7
3,538,558	-				-1.1
3,538,637	+				-0.6
3,538,637	+				-0.4
3,538,799	+	lpoA	OKFHMN_18230	0.17	+0.2
3,538,852	-	lpoA	OKFHMN_18230	0.19	+0.3
3,538,884	-	lpoA	OKFHMN_18230	0.21	+0.5
3,538,884	-	lpoA	OKFHMN_18230	0.21	+0.6
3,538,993	-	lpoA	OKFHMN_18230	0.26	+0.0
3,539,191	-	lpoA	OKFHMN_18230	0.36	+0.3
3,539,284	+	lpoA	OKFHMN_18230	0.40	-1.8
3,539,284	+	lpoA	OKFHMN_18230	0.40	-1.3
3,539,285	-	lpoA	OKFHMN_18230	0.40	-0.1
3,539,287	+	lpoA	OKFHMN_18230	0.41	+1.0
3,539,287	+	lpoA	OKFHMN_18230	0.41	-0.3
3,539,287	+	lpoA	OKFHMN_18230	0.41	+0.5
3,539,288	-	lpoA	OKFHMN_18230	0.41	-0.5
3,539,356	-	lpoA	OKFHMN_18230	0.44	-0.2
3,539,486	-	lpoA	OKFHMN_18230	0.50	-1.0
3,539,590	+	lpoA	OKFHMN_18230	0.55	+0.7
3,539,591	-	lpoA	OKFHMN_18230	0.55	-2.1
3,539,644	-	lpoA	OKFHMN_18230	0.58	-0.0
3,539,901	+	lpoA	OKFHMN_18230	0.71	+0.9
3,539,929	-	lpoA	OKFHMN_18230	0.72	+0.1
3,539,929	-	lpoA	OKFHMN_18230	0.72	-0.1
3,539,979	+	lpoA	OKFHMN_18230	0.74	+0.5
3,540,026	-	lpoA	OKFHMN_18230	0.77	-0.8
3,540,267	+	lpoA	OKFHMN_18230	0.89	+1.4
3,540,299	-				+0.3
3,540,299	-				+0.1
3,540,319	-				+0.3
3,540,319	-				-0.1
3,540,319	-				-0.4
3,540,351	-				+0.5
3,540,384	+				-0.7
3,540,384	+				+0.4
3,540,384	+				-1.5
3,540,386	+				+1.7
3,540,386	+				+0.4
3,540,386	+				-2.0
3,540,386	+				+0.4
3,540,386	+				-0.2
3,540,387	-				-1.8
3,540,387	-				+1.2
3,540,387	-				+0.8
3,540,408	+				-0.5
3,540,409	-				+0.1
3,540,498	+				-0.0
3,540,499	-				+0.5
3,540,499	-				+0.1
3,540,605	-				+0.4
3,540,665	+	rsmI	OKFHMN_18235	0.12	+1.9
3,540,665	+	rsmI	OKFHMN_18235	0.12	-0.2
3,540,766	-	rsmI	OKFHMN_18235	0.24	+0.8
3,540,869	-	rsmI	OKFHMN_18235	0.36	-3.6
3,540,882	+	rsmI	OKFHMN_18235	0.37	-0.2
3,540,937	-	rsmI	OKFHMN_18235	0.44	-0.6
3,540,982	+	rsmI	OKFHMN_18235	0.49	+0.7
3,541,028	+	rsmI	OKFHMN_18235	0.54	-0.4
3,541,028	+	rsmI	OKFHMN_18235	0.54	-1.6
3,541,089	-	rsmI	OKFHMN_18235	0.61	+0.2
3,541,092	+	rsmI	OKFHMN_18235	0.62	-0.1
3,541,093	-	rsmI	OKFHMN_18235	0.62	+1.9
3,541,104	+	rsmI	OKFHMN_18235	0.63	-0.1
3,541,104	+	rsmI	OKFHMN_18235	0.63	-0.1
3,541,105	-	rsmI	OKFHMN_18235	0.63	-1.6
3,541,118	+	rsmI	OKFHMN_18235	0.65	-1.1
3,541,393	+				-1.8
3,541,393	+				-0.1
3,541,395	+				-0.2
3,541,395	+				+0.1
3,541,395	+				-3.0
3,541,395	+				+0.0
3,541,396	-				-0.4
3,541,396	-				-1.2
3,541,400	-				+0.3
3,541,400	-				+0.3