Strain Fitness in Escherichia coli ECRC100 around OKFHMN_17485

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrpsK and rpsD are separated by 33 nucleotidesrpsD and rpoA are separated by 25 nucleotidesrpoA and OKFHMN_17490 are separated by 40 nucleotidesOKFHMN_17490 and yhdN are separated by 106 nucleotidesyhdN and zntR are separated by 10 nucleotides OKFHMN_17475: rpsK - 30S ribosomal protein S11, at 3,397,971 to 3,398,360 rpsK OKFHMN_17480: rpsD - 30S ribosomal protein S4, at 3,398,394 to 3,399,014 rpsD OKFHMN_17485: rpoA - DNA-directed RNA polymerase subunit alpha, at 3,399,040 to 3,400,029 rpoA OKFHMN_17490: OKFHMN_17490 - 50S ribosomal protein L17, at 3,400,070 to 3,400,453 _17490 OKFHMN_17495: yhdN - Uncharacterized protein YhdN, at 3,400,560 to 3,400,928 yhdN OKFHMN_17500: zntR - Zn(2+)-responsive transcriptional regulator, at 3,400,939 to 3,401,364 zntR Position (kb) 3399 3400 3401Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3400.515 kb on + strandat 3400.515 kb on + strandat 3400.515 kb on + strandat 3400.516 kb on - strandat 3400.555 kb on + strandat 3400.555 kb on + strandat 3400.556 kb on - strandat 3400.556 kb on - strandat 3400.567 kb on + strandat 3400.567 kb on + strandat 3400.592 kb on + strandat 3400.595 kb on - strandat 3400.926 kb on + strandat 3400.926 kb on + strandat 3400.934 kb on + strandat 3400.934 kb on + strandat 3400.935 kb on - strandat 3400.935 kb on - strandat 3400.938 kb on + strandat 3400.938 kb on + strandat 3400.938 kb on + strandat 3400.938 kb on + strandat 3400.938 kb on + strandat 3400.939 kb on - strandat 3400.939 kb on - strandat 3400.939 kb on - strandat 3400.942 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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3,400,515 + +0.9
3,400,515 + -0.2
3,400,515 + +0.5
3,400,516 - +1.6
3,400,555 + -0.4
3,400,555 + +0.8
3,400,556 - -1.9
3,400,556 - -0.0
3,400,567 + +0.2
3,400,567 + +0.2
3,400,592 + +0.1
3,400,595 - -1.4
3,400,926 + +0.7
3,400,926 + +0.1
3,400,934 + -3.4
3,400,934 + -3.2
3,400,935 - +0.1
3,400,935 - -1.0
3,400,938 + +0.3
3,400,938 + -0.2
3,400,938 + +2.1
3,400,938 + +0.3
3,400,938 + +1.2
3,400,939 - +0.8
3,400,939 - -0.1
3,400,939 - +0.8
3,400,942 + -1.0

Or see this region's nucleotide sequence