Strain Fitness in Escherichia coli ECRC100 around OKFHMN_17040

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
3,326,021	+	greB	OKFHMN_17030	0.88	+0.1
3,326,022	-	greB	OKFHMN_17030	0.89	-0.2
3,326,022	-	greB	OKFHMN_17030	0.89	+0.4
3,326,022	-	greB	OKFHMN_17030	0.89	-0.0
3,326,102	+				-0.7
3,326,118	+				-0.2
3,326,118	+				-0.0
3,326,119	-				+0.2
3,326,120	+				+0.6
3,326,120	+				+0.7
3,326,132	-				+0.4
3,326,174	+				+0.4
3,326,174	+				+0.3
3,326,175	-				-1.3
3,326,175	-				+0.1
3,326,175	-				-0.4
3,326,186	+				+1.0
3,326,189	+				+0.9
3,326,230	-				+0.4
3,326,262	-				+0.3
3,326,269	+				-0.9
3,326,269	+				-0.1
3,326,316	-				-1.4
3,326,369	+				-0.3
3,326,369	+				-1.3
3,326,370	-				+0.5
3,326,455	+	ompR_G63V	OKFHMN_17035	0.21	+0.6
3,326,455	+	ompR_G63V	OKFHMN_17035	0.21	-3.4
3,326,455	+	ompR_G63V	OKFHMN_17035	0.21	-0.5
3,326,456	-	ompR_G63V	OKFHMN_17035	0.21	-2.3
3,326,456	-	ompR_G63V	OKFHMN_17035	0.21	+0.2
3,326,461	-	ompR_G63V	OKFHMN_17035	0.22	-0.8
3,326,470	-	ompR_G63V	OKFHMN_17035	0.23	-1.1
3,326,475	+	ompR_G63V	OKFHMN_17035	0.24	-0.8
3,326,476	-	ompR_G63V	OKFHMN_17035	0.24	-0.2
3,326,576	-	ompR_G63V	OKFHMN_17035	0.38	-0.6
3,326,990	+				-1.0
3,326,990	+				-0.0
3,327,061	-				-0.3
3,327,109	+				-1.0
3,327,109	+				+0.7
3,327,109	+				-0.2
3,327,110	-				+0.3
3,327,110	-				+0.4
3,327,110	-				+0.7
3,327,110	-				+0.2
3,327,157	-	envZ	OKFHMN_17040	0.10	-0.4
3,327,157	-	envZ	OKFHMN_17040	0.10	+0.8
3,327,159	+	envZ	OKFHMN_17040	0.10	+2.3
3,327,160	-	envZ	OKFHMN_17040	0.10	+0.2
3,327,183	+	envZ	OKFHMN_17040	0.12	+0.2
3,327,183	+	envZ	OKFHMN_17040	0.12	-2.5
3,327,183	+	envZ	OKFHMN_17040	0.12	+0.3
3,327,183	+	envZ	OKFHMN_17040	0.12	+0.4
3,327,184	-	envZ	OKFHMN_17040	0.12	+0.9
3,327,184	-	envZ	OKFHMN_17040	0.12	+0.2
3,327,341	+	envZ	OKFHMN_17040	0.24	+0.4
3,327,507	+	envZ	OKFHMN_17040	0.36	-0.1
3,327,507	+	envZ	OKFHMN_17040	0.36	-1.5
3,327,508	-	envZ	OKFHMN_17040	0.36	+0.0
3,327,519	+	envZ	OKFHMN_17040	0.37	-0.1
3,327,520	-	envZ	OKFHMN_17040	0.37	+0.1
3,327,524	+	envZ	OKFHMN_17040	0.37	+1.0
3,327,552	+	envZ	OKFHMN_17040	0.39	+1.0
3,327,552	+	envZ	OKFHMN_17040	0.39	+0.6
3,327,685	-	envZ	OKFHMN_17040	0.49	-0.2
3,327,699	+	envZ	OKFHMN_17040	0.50	+0.5
3,327,699	+	envZ	OKFHMN_17040	0.50	-0.2
3,327,740	+	envZ	OKFHMN_17040	0.53	+0.3
3,327,756	+	envZ	OKFHMN_17040	0.54	+0.5
3,327,811	+	envZ	OKFHMN_17040	0.59	-0.1
3,328,047	+	envZ	OKFHMN_17040	0.76	+0.1
3,328,167	+	envZ	OKFHMN_17040	0.85	-1.9
3,328,167	+	envZ	OKFHMN_17040	0.85	-2.3
3,328,167	+	envZ	OKFHMN_17040	0.85	+0.4
3,328,167	+	envZ	OKFHMN_17040	0.85	+0.0
3,328,167	+	envZ	OKFHMN_17040	0.85	-0.5
3,328,167	+	envZ	OKFHMN_17040	0.85	+0.0
3,328,168	-	envZ	OKFHMN_17040	0.85	+2.9
3,328,168	-	envZ	OKFHMN_17040	0.85	-0.3
3,328,412	-				-1.0
3,328,417	-				-0.3
3,328,424	-				+0.1
3,328,424	-				-0.0
3,328,424	-				+0.0
3,328,427	+				-1.0
3,328,427	+				+1.3
3,328,428	-				+0.2
3,328,499	+				-1.9
3,328,499	+				+0.6
3,328,500	-				+0.9
3,328,500	-				+0.3
3,328,500	-				+0.3
3,328,500	-				+1.5
3,328,503	+				+0.1
3,328,504	-				-0.3
3,328,571	+				+0.3
3,328,572	-				+1.3
3,328,578	+				+0.4
3,328,604	-				-1.8
3,328,665	+	pckA	OKFHMN_17045	0.13	+0.8
3,328,713	+	pckA	OKFHMN_17045	0.16	+0.3
3,328,723	-	pckA	OKFHMN_17045	0.17	-0.2
3,328,723	-	pckA	OKFHMN_17045	0.17	-0.3
3,328,760	+	pckA	OKFHMN_17045	0.19	-1.0
3,328,761	-	pckA	OKFHMN_17045	0.19	-2.7
3,328,785	+	pckA	OKFHMN_17045	0.21	-0.2
3,328,786	-	pckA	OKFHMN_17045	0.21	-0.1
3,328,786	-	pckA	OKFHMN_17045	0.21	-0.1
3,328,786	-	pckA	OKFHMN_17045	0.21	-3.8
3,329,043	+	pckA	OKFHMN_17045	0.37	+0.3
3,329,055	-	pckA	OKFHMN_17045	0.37	+0.4
3,329,169	-	pckA	OKFHMN_17045	0.44	+0.2
3,329,203	-	pckA	OKFHMN_17045	0.47	+1.5
3,329,232	+	pckA	OKFHMN_17045	0.48	-0.2