Strain Fitness in Escherichia coli ECRC100 around OKFHMN_15135

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
2,928,501	+	yidH	OKFHMN_15120	0.59	+1.0
2,928,501	+	yidH	OKFHMN_15120	0.59	+0.0
2,928,501	+	yidH	OKFHMN_15120	0.59	-0.1
2,928,501	+	yidH	OKFHMN_15120	0.59	+0.3
2,928,502	-	yidH	OKFHMN_15120	0.59	-0.4
2,928,502	-	yidH	OKFHMN_15120	0.59	+1.4
2,928,502	-	yidH	OKFHMN_15120	0.59	+0.6
2,928,574	+	yidH	OKFHMN_15120	0.80	+0.0
2,928,575	-	yidH	OKFHMN_15120	0.80	-0.0
2,928,589	+	yidH	OKFHMN_15120	0.84	+0.7
2,928,604	+	yidH	OKFHMN_15120	0.88	+0.7
2,928,605	-	yidH	OKFHMN_15120	0.89	+1.2
2,928,690	+	yidG	OKFHMN_15125	0.15	+0.7
2,928,690	+	yidG	OKFHMN_15125	0.15	-0.2
2,928,690	+	yidG	OKFHMN_15125	0.15	-0.7
2,928,690	+	yidG	OKFHMN_15125	0.15	+0.1
2,928,690	+	yidG	OKFHMN_15125	0.15	+0.4
2,928,691	-	yidG	OKFHMN_15125	0.16	-0.4
2,928,691	-	yidG	OKFHMN_15125	0.16	+1.4
2,928,691	-	yidG	OKFHMN_15125	0.16	+0.4
2,928,711	+	yidG	OKFHMN_15125	0.21	-2.2
2,928,779	+	yidG	OKFHMN_15125	0.40	+0.7
2,928,779	+	yidG	OKFHMN_15125	0.40	-0.5
2,928,780	-	yidG	OKFHMN_15125	0.40	+1.2
2,928,833	-	yidG	OKFHMN_15125	0.55	-3.5
2,928,939	-	yidG	OKFHMN_15125	0.84	-0.2
2,928,957	+	yidG	OKFHMN_15125	0.89	+0.4
2,928,958	-	yidG	OKFHMN_15125	0.89	+0.0
2,928,959	+	yidG	OKFHMN_15125	0.90	-0.1
2,928,959	+	yidG	OKFHMN_15125	0.90	-1.5
2,928,960	-				-2.3
2,928,960	-				-0.3
2,928,960	-				+1.8
2,928,975	-				+0.2
2,928,975	-				-0.5
2,928,975	-				+0.4
2,928,975	-				+0.5
2,929,034	+				+0.1
2,929,034	+				-0.0
2,929,034	+				-0.4
2,929,122	-		OKFHMN_15130	0.26	+0.2
2,929,232	+		OKFHMN_15130	0.48	+0.2
2,929,241	+		OKFHMN_15130	0.50	+1.2
2,929,270	+		OKFHMN_15130	0.56	+0.6
2,929,421	+		OKFHMN_15130	0.86	+1.1
2,929,422	-		OKFHMN_15130	0.86	+0.1
2,929,500	-				-0.5
2,929,571	-				+0.8
2,929,826	-	emrD	OKFHMN_15135	0.28	-0.7
2,929,881	+	emrD	OKFHMN_15135	0.32	+0.6
2,930,048	+	emrD	OKFHMN_15135	0.46	-0.0
2,930,048	+	emrD	OKFHMN_15135	0.46	+0.8
2,930,056	-	emrD	OKFHMN_15135	0.47	+0.4
2,930,082	+	emrD	OKFHMN_15135	0.49	-0.1
2,930,082	+	emrD	OKFHMN_15135	0.49	+2.1
2,930,082	+	emrD	OKFHMN_15135	0.49	-1.7
2,930,083	-	emrD	OKFHMN_15135	0.49	+1.3
2,930,084	+	emrD	OKFHMN_15135	0.49	+0.5
2,930,328	+	emrD	OKFHMN_15135	0.70	+0.7
2,930,329	-	emrD	OKFHMN_15135	0.70	+0.3
2,930,433	+	emrD	OKFHMN_15135	0.79	+1.2
2,930,495	+	emrD	OKFHMN_15135	0.84	-1.1
2,930,516	+	emrD	OKFHMN_15135	0.86	-1.1
2,930,516	+	emrD	OKFHMN_15135	0.86	+0.3
2,930,516	+	emrD	OKFHMN_15135	0.86	+0.1
2,930,517	-	emrD	OKFHMN_15135	0.86	-0.2
2,930,528	+	emrD	OKFHMN_15135	0.87	-0.8
2,930,528	+	emrD	OKFHMN_15135	0.87	+0.1
2,930,592	+				+1.1
2,930,592	+				-1.2
2,930,601	+				-0.2
2,930,602	-				-0.1
2,930,604	-				-0.8
2,930,604	-				+0.2
2,930,641	+				-0.6
2,930,654	-				+0.2
2,930,670	+				+0.5
2,930,671	-				-0.6
2,930,699	-				+0.9
2,930,715	+				+0.3
2,930,736	-				-1.4
2,930,754	+				+0.3
2,930,754	+				+0.1
2,930,755	-				+0.1
2,930,755	-				-2.1
2,930,755	-				-0.1
2,930,759	+				+0.1
2,930,760	-				-0.3
2,930,780	+				-0.5
2,930,781	-				+0.8
2,930,781	-				+0.0
2,930,783	-				+0.5
2,930,816	+				+0.1
2,930,816	+				-1.9
2,930,820	+				+0.6
2,930,858	+				-0.2
2,930,858	+				-0.2
2,930,858	+				-1.3
2,930,858	+				-0.2
2,930,858	+				-0.7
2,930,907	+				-0.1
2,931,024	+	tisB	OKFHMN_15140	0.69	+0.3
2,931,025	-	tisB	OKFHMN_15140	0.70	+0.2
2,931,161	+				+0.4
2,931,161	+				-0.1
2,931,161	+				+0.4
2,931,162	-				+0.2
2,931,162	-				-0.6
2,931,253	+				-0.6
2,931,265	+				+1.1
2,931,274	-				+0.1
2,931,274	-				+0.1
2,931,276	+				-1.4
2,931,277	-				+0.6
2,931,277	-				-0.2
2,931,278	+				-0.3
2,931,279	-				+0.9
2,931,402	+				+0.6
2,931,420	-				-0.2
2,931,420	-				-2.3
2,931,420	-				+0.0
2,931,422	+				+0.1
2,931,490	-				-3.4
2,931,499	-				-1.5
2,931,499	-				+0.9
2,931,565	-				-0.1
2,931,578	+				+0.7
2,931,580	+				-0.8
2,931,581	-				+0.5
2,931,621	+				-0.4
2,931,644	+				-0.1
2,931,644	+				-0.0
2,931,647	+				-2.3