Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dnaA and dnaN are separated by 4 nucleotides dnaN and recF overlap by 1 nucleotides
OKFHMN_15010: dnaA - chromosomal replication initiator protein DnaA, at 2,905,117 to 2,906,520
dnaA
OKFHMN_15020: dnaN - DNA polymerase III subunit beta, at 2,906,525 to 2,907,625
dnaN
OKFHMN_15025: recF - DNA replication/repair protein RecF, at 2,907,625 to 2,908,698
recF
Position (kb)
2906
2907
2908 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2907.623 kb on + strand at 2907.754 kb on + strand, within recF at 2907.755 kb on - strand, within recF at 2907.757 kb on - strand, within recF at 2907.845 kb on + strand, within recF at 2907.845 kb on + strand, within recF at 2907.934 kb on - strand, within recF at 2907.991 kb on - strand, within recF at 2907.996 kb on - strand, within recF at 2908.015 kb on + strand, within recF at 2908.192 kb on - strand, within recF at 2908.207 kb on + strand, within recF at 2908.208 kb on - strand, within recF at 2908.240 kb on - strand, within recF at 2908.240 kb on - strand, within recF at 2908.312 kb on + strand, within recF at 2908.312 kb on + strand, within recF at 2908.313 kb on - strand, within recF at 2908.313 kb on - strand, within recF at 2908.356 kb on - strand, within recF at 2908.360 kb on + strand, within recF at 2908.391 kb on + strand, within recF at 2908.391 kb on + strand, within recF at 2908.425 kb on + strand, within recF at 2908.425 kb on + strand, within recF at 2908.425 kb on + strand, within recF at 2908.425 kb on + strand, within recF at 2908.426 kb on - strand, within recF at 2908.426 kb on - strand, within recF at 2908.426 kb on - strand, within recF at 2908.447 kb on - strand, within recF at 2908.447 kb on - strand, within recF at 2908.466 kb on + strand, within recF at 2908.527 kb on - strand, within recF
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 2,907,623 + -0.3 2,907,754 + recF OKFHMN_15025 0.12 +0.1 2,907,755 - recF OKFHMN_15025 0.12 -1.5 2,907,757 - recF OKFHMN_15025 0.12 +0.0 2,907,845 + recF OKFHMN_15025 0.20 -2.7 2,907,845 + recF OKFHMN_15025 0.20 -3.9 2,907,934 - recF OKFHMN_15025 0.29 +1.5 2,907,991 - recF OKFHMN_15025 0.34 +0.1 2,907,996 - recF OKFHMN_15025 0.35 +0.9 2,908,015 + recF OKFHMN_15025 0.36 -2.1 2,908,192 - recF OKFHMN_15025 0.53 -0.4 2,908,207 + recF OKFHMN_15025 0.54 -1.6 2,908,208 - recF OKFHMN_15025 0.54 +0.0 2,908,240 - recF OKFHMN_15025 0.57 -0.4 2,908,240 - recF OKFHMN_15025 0.57 +0.6 2,908,312 + recF OKFHMN_15025 0.64 +0.1 2,908,312 + recF OKFHMN_15025 0.64 +0.0 2,908,313 - recF OKFHMN_15025 0.64 -1.7 2,908,313 - recF OKFHMN_15025 0.64 +0.3 2,908,356 - recF OKFHMN_15025 0.68 +0.3 2,908,360 + recF OKFHMN_15025 0.68 +0.5 2,908,391 + recF OKFHMN_15025 0.71 -2.6 2,908,391 + recF OKFHMN_15025 0.71 -1.2 2,908,425 + recF OKFHMN_15025 0.74 +0.0 2,908,425 + recF OKFHMN_15025 0.74 +0.2 2,908,425 + recF OKFHMN_15025 0.74 -0.0 2,908,425 + recF OKFHMN_15025 0.74 -0.3 2,908,426 - recF OKFHMN_15025 0.75 -0.3 2,908,426 - recF OKFHMN_15025 0.75 +2.2 2,908,426 - recF OKFHMN_15025 0.75 +0.9 2,908,447 - recF OKFHMN_15025 0.77 +0.8 2,908,447 - recF OKFHMN_15025 0.77 -1.5 2,908,466 + recF OKFHMN_15025 0.78 +0.6 2,908,527 - recF OKFHMN_15025 0.84 -0.0
Or see this region's nucleotide sequence