Strain Fitness in Escherichia coli ECRC100 around OKFHMN_14835

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntatpD and atpC are separated by 20 nucleotidesatpC and glmU are separated by 351 nucleotides OKFHMN_14830: atpD - F0F1 ATP synthase subunit beta, at 2,864,261 to 2,865,643 atpD OKFHMN_14835: atpC - F0F1 ATP synthase subunit epsilon, at 2,865,664 to 2,866,083 atpC OKFHMN_14845: glmU - bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU, at 2,866,435 to 2,867,805 glmU Position (kb) 2865 2866 2867Strain fitness (log2 ratio) -1 0 1at 2865.963 kb on + strand, within atpCat 2866.158 kb on - strandat 2866.168 kb on + strandat 2866.169 kb on - strandat 2866.181 kb on + strandat 2866.181 kb on + strandat 2866.183 kb on + strandat 2866.183 kb on + strandat 2866.184 kb on - strandat 2866.184 kb on - strandat 2866.184 kb on - strandat 2866.249 kb on - strandat 2866.249 kb on - strandat 2866.419 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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2,865,963 + atpC OKFHMN_14835 0.71 -1.4
2,866,158 - -0.6
2,866,168 + -0.2
2,866,169 - -0.4
2,866,181 + -1.2
2,866,181 + +0.9
2,866,183 + -0.0
2,866,183 + -0.5
2,866,184 - +0.6
2,866,184 - -1.1
2,866,184 - +0.6
2,866,249 - +0.1
2,866,249 - +0.1
2,866,419 + +0.1

Or see this region's nucleotide sequence