Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hdfR and Trp_trna are separated by 95 nucleotides Trp_trna and Asp_trna are separated by 8 nucleotides Asp_trna and 5S_rrna are separated by 54 nucleotides 5S_rrna and 23S_rrna are separated by 94 nucleotides
OKFHMN_14675: hdfR - HTH-type transcriptional regulator HdfR, at 2,833,668 to 2,834,507
hdfR
OKFHMN_14680: Trp_trna - tRNA-Trp(cca), at 2,834,603 to 2,834,678
_trna
OKFHMN_14685: Asp_trna - tRNA-Asp(gtc), at 2,834,687 to 2,834,763
_trna
OKFHMN_14690: 5S_rrna - 5S ribosomal RNA, at 2,834,818 to 2,834,933
_rrna
OKFHMN_14695: 23S_rrna - 23S ribosomal RNA, at 2,835,028 to 2,837,932
_rrna
Position (kb)
2834
2835 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2833.867 kb on - strand, within hdfR at 2833.867 kb on - strand, within hdfR at 2833.919 kb on + strand, within hdfR at 2833.919 kb on + strand, within hdfR at 2833.920 kb on - strand, within hdfR at 2833.932 kb on - strand, within hdfR at 2833.973 kb on + strand, within hdfR at 2833.973 kb on + strand, within hdfR at 2833.973 kb on + strand, within hdfR at 2833.974 kb on - strand, within hdfR at 2833.974 kb on - strand, within hdfR at 2833.974 kb on - strand, within hdfR at 2833.974 kb on - strand, within hdfR at 2833.974 kb on - strand, within hdfR at 2833.979 kb on + strand, within hdfR at 2833.979 kb on + strand, within hdfR at 2834.022 kb on - strand, within hdfR at 2834.030 kb on - strand, within hdfR at 2834.102 kb on + strand, within hdfR at 2834.102 kb on + strand, within hdfR at 2834.135 kb on + strand, within hdfR at 2834.138 kb on + strand, within hdfR at 2834.138 kb on + strand, within hdfR at 2834.174 kb on + strand, within hdfR at 2834.175 kb on - strand, within hdfR at 2834.207 kb on + strand, within hdfR at 2834.208 kb on - strand, within hdfR at 2834.211 kb on + strand, within hdfR at 2834.211 kb on + strand, within hdfR at 2834.211 kb on + strand, within hdfR at 2834.212 kb on - strand, within hdfR at 2834.431 kb on + strand at 2834.450 kb on + strand at 2834.457 kb on - strand at 2834.473 kb on + strand at 2834.503 kb on - strand at 2834.506 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 2,833,867 - hdfR OKFHMN_14675 0.24 -0.2 2,833,867 - hdfR OKFHMN_14675 0.24 +0.1 2,833,919 + hdfR OKFHMN_14675 0.30 -1.9 2,833,919 + hdfR OKFHMN_14675 0.30 -1.0 2,833,920 - hdfR OKFHMN_14675 0.30 -1.0 2,833,932 - hdfR OKFHMN_14675 0.31 -2.0 2,833,973 + hdfR OKFHMN_14675 0.36 -0.6 2,833,973 + hdfR OKFHMN_14675 0.36 -0.8 2,833,973 + hdfR OKFHMN_14675 0.36 +0.3 2,833,974 - hdfR OKFHMN_14675 0.36 -0.7 2,833,974 - hdfR OKFHMN_14675 0.36 -0.1 2,833,974 - hdfR OKFHMN_14675 0.36 +0.7 2,833,974 - hdfR OKFHMN_14675 0.36 -1.3 2,833,974 - hdfR OKFHMN_14675 0.36 -0.5 2,833,979 + hdfR OKFHMN_14675 0.37 -1.5 2,833,979 + hdfR OKFHMN_14675 0.37 +0.7 2,834,022 - hdfR OKFHMN_14675 0.42 -2.0 2,834,030 - hdfR OKFHMN_14675 0.43 -0.9 2,834,102 + hdfR OKFHMN_14675 0.52 -0.7 2,834,102 + hdfR OKFHMN_14675 0.52 -1.9 2,834,135 + hdfR OKFHMN_14675 0.56 +1.5 2,834,138 + hdfR OKFHMN_14675 0.56 -2.8 2,834,138 + hdfR OKFHMN_14675 0.56 -3.2 2,834,174 + hdfR OKFHMN_14675 0.60 -0.3 2,834,175 - hdfR OKFHMN_14675 0.60 -3.5 2,834,207 + hdfR OKFHMN_14675 0.64 -1.9 2,834,208 - hdfR OKFHMN_14675 0.64 -1.8 2,834,211 + hdfR OKFHMN_14675 0.65 -2.7 2,834,211 + hdfR OKFHMN_14675 0.65 -2.0 2,834,211 + hdfR OKFHMN_14675 0.65 -1.1 2,834,212 - hdfR OKFHMN_14675 0.65 +0.4 2,834,431 + +0.2 2,834,450 + +0.1 2,834,457 - -0.6 2,834,473 + -0.0 2,834,503 - +2.2 2,834,506 - -2.4
Or see this region's nucleotide sequence