Strain Fitness in Escherichia coli ECRC100 around OKFHMN_14595

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrho and trxA are separated by 326 nucleotidestrxA and rhlB are separated by 130 nucleotides OKFHMN_14590: rho - transcription termination factor Rho, at 2,813,997 to 2,815,256 rho OKFHMN_14595: trxA - thioredoxin TrxA, at 2,815,583 to 2,815,912 trxA OKFHMN_14600: rhlB - ATP-dependent RNA helicase RhlB, at 2,816,043 to 2,817,308 rhlB Position (kb) 2815 2816Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2815.312 kb on - strandat 2815.523 kb on - strandat 2815.764 kb on + strand, within trxAat 2815.863 kb on - strand, within trxAat 2815.898 kb on - strandat 2815.912 kb on + strandat 2815.912 kb on + strandat 2815.912 kb on + strandat 2815.912 kb on + strandat 2815.913 kb on - strandat 2815.913 kb on - strandat 2815.914 kb on + strandat 2815.915 kb on - strandat 2815.915 kb on - strandat 2815.915 kb on - strandat 2815.915 kb on - strandat 2815.915 kb on - strandat 2815.975 kb on + strandat 2815.976 kb on - strandat 2815.976 kb on - strandat 2816.011 kb on - strandat 2816.018 kb on + strandat 2816.019 kb on - strandat 2816.019 kb on - strandat 2816.019 kb on - strandat 2816.021 kb on + strandat 2816.022 kb on - strandat 2816.042 kb on + strandat 2816.042 kb on + strandat 2816.043 kb on - strandat 2816.132 kb on + strandat 2816.306 kb on - strand, within rhlBat 2816.306 kb on - strand, within rhlBat 2816.397 kb on + strand, within rhlBat 2816.477 kb on - strand, within rhlBat 2816.524 kb on + strand, within rhlBat 2816.531 kb on - strand, within rhlBat 2816.553 kb on + strand, within rhlBat 2816.570 kb on + strand, within rhlBat 2816.576 kb on + strand, within rhlBat 2816.598 kb on - strand, within rhlBat 2816.598 kb on - strand, within rhlBat 2816.694 kb on + strand, within rhlBat 2816.695 kb on - strand, within rhlBat 2816.735 kb on + strand, within rhlBat 2816.735 kb on + strand, within rhlBat 2816.759 kb on + strand, within rhlBat 2816.834 kb on + strand, within rhlB

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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2,815,312 - -2.9
2,815,523 - -1.7
2,815,764 + trxA OKFHMN_14595 0.55 -1.5
2,815,863 - trxA OKFHMN_14595 0.85 +0.6
2,815,898 - -2.1
2,815,912 + -0.2
2,815,912 + -0.9
2,815,912 + -0.4
2,815,912 + +0.6
2,815,913 - -0.9
2,815,913 - +1.7
2,815,914 + -0.7
2,815,915 - -2.1
2,815,915 - +0.5
2,815,915 - -1.0
2,815,915 - -0.3
2,815,915 - -1.2
2,815,975 + +0.6
2,815,976 - +1.0
2,815,976 - +0.9
2,816,011 - -0.5
2,816,018 + +0.2
2,816,019 - +0.2
2,816,019 - -1.8
2,816,019 - +0.2
2,816,021 + -0.7
2,816,022 - -0.1
2,816,042 + +0.1
2,816,042 + -0.3
2,816,043 - -1.0
2,816,132 + -0.8
2,816,306 - rhlB OKFHMN_14600 0.21 -0.2
2,816,306 - rhlB OKFHMN_14600 0.21 -0.3
2,816,397 + rhlB OKFHMN_14600 0.28 +0.9
2,816,477 - rhlB OKFHMN_14600 0.34 -2.2
2,816,524 + rhlB OKFHMN_14600 0.38 -0.0
2,816,531 - rhlB OKFHMN_14600 0.39 +0.2
2,816,553 + rhlB OKFHMN_14600 0.40 -1.7
2,816,570 + rhlB OKFHMN_14600 0.42 +1.2
2,816,576 + rhlB OKFHMN_14600 0.42 -0.8
2,816,598 - rhlB OKFHMN_14600 0.44 +2.1
2,816,598 - rhlB OKFHMN_14600 0.44 +0.4
2,816,694 + rhlB OKFHMN_14600 0.51 +0.0
2,816,695 - rhlB OKFHMN_14600 0.52 +0.2
2,816,735 + rhlB OKFHMN_14600 0.55 +0.4
2,816,735 + rhlB OKFHMN_14600 0.55 +0.7
2,816,759 + rhlB OKFHMN_14600 0.57 -0.6
2,816,834 + rhlB OKFHMN_14600 0.62 +0.3

Or see this region's nucleotide sequence