Strain Fitness in Escherichia coli ECRC100 around OKFHMN_12095

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttnpA and yjfZ are separated by 859 nucleotidesyjfZ and rplI are separated by 70 nucleotidesrplI and rpsR are separated by 41 nucleotidesrpsR and priB are separated by 4 nucleotides OKFHMN_12090: tnpA - IS200/IS605-like element IS609 family transposase, at 2,319,324 to 2,319,755 tnpA OKFHMN_12095: yjfZ - Uncharacterized protein YjfZ, at 2,320,615 to 2,321,172 yjfZ OKFHMN_12100: rplI - 50S ribosomal protein L9, at 2,321,243 to 2,321,692 rplI OKFHMN_12105: rpsR - 30S ribosomal protein S18, at 2,321,734 to 2,321,961 rpsR OKFHMN_12110: priB - primosomal replication protein N, at 2,321,966 to 2,322,280 priB Position (kb) 2320 2321 2322Strain fitness (log2 ratio) -2 -1 0 1 2at 2319.754 kb on - strandat 2320.159 kb on + strandat 2320.254 kb on - strandat 2320.484 kb on + strandat 2320.527 kb on + strandat 2320.576 kb on - strandat 2320.627 kb on - strandat 2320.666 kb on - strandat 2320.768 kb on + strand, within yjfZat 2320.768 kb on + strand, within yjfZat 2320.775 kb on + strand, within yjfZat 2320.837 kb on + strand, within yjfZat 2320.838 kb on - strand, within yjfZat 2320.904 kb on - strand, within yjfZat 2320.926 kb on + strand, within yjfZat 2320.970 kb on + strand, within yjfZat 2320.971 kb on - strand, within yjfZat 2321.097 kb on + strand, within yjfZat 2321.097 kb on + strand, within yjfZat 2321.101 kb on + strand, within yjfZat 2321.102 kb on - strand, within yjfZat 2321.102 kb on - strand, within yjfZat 2321.129 kb on + strandat 2321.129 kb on + strandat 2321.159 kb on - strandat 2321.170 kb on + strandat 2321.170 kb on + strandat 2321.429 kb on - strand, within rplIat 2321.715 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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2,319,754 - -0.8
2,320,159 + +0.2
2,320,254 - -0.4
2,320,484 + -0.1
2,320,527 + -0.3
2,320,576 - +0.5
2,320,627 - -2.0
2,320,666 - +0.4
2,320,768 + yjfZ OKFHMN_12095 0.27 -0.6
2,320,768 + yjfZ OKFHMN_12095 0.27 +0.1
2,320,775 + yjfZ OKFHMN_12095 0.29 +1.1
2,320,837 + yjfZ OKFHMN_12095 0.40 +0.0
2,320,838 - yjfZ OKFHMN_12095 0.40 +1.3
2,320,904 - yjfZ OKFHMN_12095 0.52 -1.3
2,320,926 + yjfZ OKFHMN_12095 0.56 +0.5
2,320,970 + yjfZ OKFHMN_12095 0.64 -0.0
2,320,971 - yjfZ OKFHMN_12095 0.64 +0.9
2,321,097 + yjfZ OKFHMN_12095 0.86 -0.1
2,321,097 + yjfZ OKFHMN_12095 0.86 +0.5
2,321,101 + yjfZ OKFHMN_12095 0.87 +0.6
2,321,102 - yjfZ OKFHMN_12095 0.87 -0.1
2,321,102 - yjfZ OKFHMN_12095 0.87 +0.5
2,321,129 + +0.3
2,321,129 + -0.1
2,321,159 - +1.1
2,321,170 + -0.3
2,321,170 + +2.3
2,321,429 - rplI OKFHMN_12100 0.41 -0.7
2,321,715 - -0.7

Or see this region's nucleotide sequence