Strain Fitness in Escherichia coli ECRC100 around OKFHMN_11905

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
2,282,353	+	treC	OKFHMN_11900	0.65	-0.1
2,283,037	+				+0.4
2,283,037	+				-0.1
2,283,038	-				-1.4
2,283,126	+				+0.2
2,283,177	+				+0.3
2,283,178	-				+0.1
2,283,178	-				-0.7
2,283,178	-				+1.0
2,283,178	-				+0.7
2,283,188	-				-0.4
2,283,411	+				+0.2
2,283,412	-				-0.2
2,283,498	+				-0.7
2,283,548	-	nrdD	OKFHMN_11905	0.10	+0.5
2,283,568	+	nrdD	OKFHMN_11905	0.11	-0.1
2,283,568	+	nrdD	OKFHMN_11905	0.11	-0.2
2,283,568	+	nrdD	OKFHMN_11905	0.11	-0.9
2,283,569	-	nrdD	OKFHMN_11905	0.11	+0.6
2,283,569	-	nrdD	OKFHMN_11905	0.11	+0.3
2,283,739	-	nrdD	OKFHMN_11905	0.19	-0.1
2,283,745	+	nrdD	OKFHMN_11905	0.19	+0.5
2,283,746	-	nrdD	OKFHMN_11905	0.20	+0.3
2,283,746	-	nrdD	OKFHMN_11905	0.20	+1.2
2,283,823	+	nrdD	OKFHMN_11905	0.23	-1.9
2,283,824	-	nrdD	OKFHMN_11905	0.23	+0.6
2,283,892	-	nrdD	OKFHMN_11905	0.26	+0.1
2,283,933	+	nrdD	OKFHMN_11905	0.28	-0.3
2,283,960	+	nrdD	OKFHMN_11905	0.30	-1.1
2,283,981	+	nrdD	OKFHMN_11905	0.31	-0.3
2,283,982	-	nrdD	OKFHMN_11905	0.31	+0.4
2,284,045	+	nrdD	OKFHMN_11905	0.34	+0.1
2,284,046	-	nrdD	OKFHMN_11905	0.34	+1.7
2,284,046	-	nrdD	OKFHMN_11905	0.34	-0.3
2,284,104	+	nrdD	OKFHMN_11905	0.36	+0.1
2,284,119	+	nrdD	OKFHMN_11905	0.37	+0.3
2,284,120	-	nrdD	OKFHMN_11905	0.37	-1.1
2,284,120	-	nrdD	OKFHMN_11905	0.37	-1.0
2,284,129	+	nrdD	OKFHMN_11905	0.37	+1.0
2,284,130	-	nrdD	OKFHMN_11905	0.37	+0.4
2,284,154	-	nrdD	OKFHMN_11905	0.39	-0.7
2,284,160	+	nrdD	OKFHMN_11905	0.39	-0.3
2,284,161	-	nrdD	OKFHMN_11905	0.39	+0.1
2,284,161	-	nrdD	OKFHMN_11905	0.39	-0.4
2,284,161	-	nrdD	OKFHMN_11905	0.39	+0.6
2,284,255	-	nrdD	OKFHMN_11905	0.43	+0.2
2,284,255	-	nrdD	OKFHMN_11905	0.43	+0.3
2,284,366	+	nrdD	OKFHMN_11905	0.49	-0.2
2,284,367	-	nrdD	OKFHMN_11905	0.49	+0.5
2,284,367	-	nrdD	OKFHMN_11905	0.49	-0.8
2,284,367	-	nrdD	OKFHMN_11905	0.49	+0.8
2,284,411	+	nrdD	OKFHMN_11905	0.51	-2.8
2,284,429	+	nrdD	OKFHMN_11905	0.51	+0.3
2,284,537	-	nrdD	OKFHMN_11905	0.57	+0.1
2,284,644	+	nrdD	OKFHMN_11905	0.62	-1.4
2,284,645	-	nrdD	OKFHMN_11905	0.62	+0.2
2,284,645	-	nrdD	OKFHMN_11905	0.62	-0.4
2,284,709	-	nrdD	OKFHMN_11905	0.65	+0.3
2,284,711	-	nrdD	OKFHMN_11905	0.65	-0.3
2,284,711	-	nrdD	OKFHMN_11905	0.65	+0.4
2,284,711	-	nrdD	OKFHMN_11905	0.65	-0.7
2,284,711	-	nrdD	OKFHMN_11905	0.65	+0.0
2,284,753	-	nrdD	OKFHMN_11905	0.67	-1.4
2,284,799	-	nrdD	OKFHMN_11905	0.69	-0.3
2,284,952	-	nrdD	OKFHMN_11905	0.76	+1.5
2,285,041	+	nrdD	OKFHMN_11905	0.80	+0.3
2,285,041	+	nrdD	OKFHMN_11905	0.80	+0.4
2,285,045	-	nrdD	OKFHMN_11905	0.80	+0.1
2,285,206	+	nrdD	OKFHMN_11905	0.88	-1.2
2,285,213	-	nrdD	OKFHMN_11905	0.88	-0.3
2,285,222	+	nrdD	OKFHMN_11905	0.89	+0.2
2,285,222	+	nrdD	OKFHMN_11905	0.89	+0.3
2,285,222	+	nrdD	OKFHMN_11905	0.89	+0.1
2,285,222	+	nrdD	OKFHMN_11905	0.89	+0.4
2,285,223	-	nrdD	OKFHMN_11905	0.89	-0.4
2,285,228	-	nrdD	OKFHMN_11905	0.89	-0.5
2,285,228	-	nrdD	OKFHMN_11905	0.89	+0.6
2,285,228	-	nrdD	OKFHMN_11905	0.89	-0.5
2,285,241	+	nrdD	OKFHMN_11905	0.89	+1.0
2,285,242	-	nrdD	OKFHMN_11905	0.89	+0.5
2,285,260	+				-0.9
2,285,376	-				+0.4
2,285,380	-				-0.1
2,285,459	+				+0.3
2,285,459	+				+0.0
2,285,459	+				-1.9
2,285,460	-				+0.4
2,285,581	-				-0.0
2,285,663	-				+0.6
2,285,674	+				-2.6
2,285,675	-				+0.1
2,285,675	-				-0.3
2,285,675	-				+0.8
2,285,755	+	nrdG	OKFHMN_11915	0.21	-0.4
2,285,756	-	nrdG	OKFHMN_11915	0.22	+0.9
2,285,756	-	nrdG	OKFHMN_11915	0.22	+0.5
2,285,756	-	nrdG	OKFHMN_11915	0.22	-0.4
2,285,797	-	nrdG	OKFHMN_11915	0.30	+0.2
2,285,799	+	nrdG	OKFHMN_11915	0.31	-1.2
2,285,800	-	nrdG	OKFHMN_11915	0.31	-0.2
2,285,859	+	nrdG	OKFHMN_11915	0.44	+0.0
2,285,859	+	nrdG	OKFHMN_11915	0.44	+0.1
2,285,860	-	nrdG	OKFHMN_11915	0.44	+0.2
2,285,921	+	nrdG	OKFHMN_11915	0.57	+0.2
2,285,975	-	nrdG	OKFHMN_11915	0.69	+0.7
2,285,975	-	nrdG	OKFHMN_11915	0.69	-0.1
2,285,977	-	nrdG	OKFHMN_11915	0.69	-0.2
2,286,060	-	nrdG	OKFHMN_11915	0.87	-2.1
2,286,121	+				-1.4
2,286,133	+				+0.5
2,286,167	-				-0.2
2,286,167	-				+0.6
2,286,167	-				-0.3
2,286,167	-				+0.1
2,286,167	-				+0.4
2,286,167	-				-1.3
2,286,240	-	cybC	OKFHMN_11920	0.19	+0.7
2,286,335	+	cybC	OKFHMN_11920	0.44	+0.1