Strain Fitness in Escherichia coli ECRC100 around OKFHMN_10480

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
1,963,624	+	speD	OKFHMN_10470	0.49	+0.2
1,963,625	-	speD	OKFHMN_10470	0.49	-3.6
1,963,688	+	speD	OKFHMN_10470	0.57	-0.6
1,963,689	-	speD	OKFHMN_10470	0.57	-0.4
1,963,719	+	speD	OKFHMN_10470	0.61	+0.3
1,963,811	-	speD	OKFHMN_10470	0.72	-0.8
1,963,822	+	speD	OKFHMN_10470	0.73	-0.8
1,963,823	-	speD	OKFHMN_10470	0.74	+1.1
1,963,851	+	speD	OKFHMN_10470	0.77	-0.8
1,963,851	+	speD	OKFHMN_10470	0.77	-0.3
1,963,916	+	speD	OKFHMN_10470	0.85	+0.3
1,963,916	+	speD	OKFHMN_10470	0.85	-2.7
1,964,244	-	yacL	OKFHMN_10475	0.48	+0.1
1,964,244	-	yacL	OKFHMN_10475	0.48	+0.0
1,964,244	-	yacL	OKFHMN_10475	0.48	-1.8
1,964,244	-	yacL	OKFHMN_10475	0.48	-0.1
1,964,245	+	yacL	OKFHMN_10475	0.48	-0.5
1,964,246	-	yacL	OKFHMN_10475	0.48	-0.9
1,964,246	-	yacL	OKFHMN_10475	0.48	-1.0
1,964,246	-	yacL	OKFHMN_10475	0.48	+0.3
1,964,348	+	yacL	OKFHMN_10475	0.77	+1.0
1,964,384	+	yacL	OKFHMN_10475	0.87	+0.2
1,964,385	-	yacL	OKFHMN_10475	0.87	+1.4
1,964,394	+	yacL	OKFHMN_10475	0.89	-0.4
1,964,432	+				-1.0
1,964,486	+				+0.1
1,964,487	-				-0.5
1,964,487	-				+0.6
1,964,487	-				+0.4
1,964,487	-				-0.7
1,964,491	-				-0.4
1,964,685	-				-0.6
1,965,385	-	acnB	OKFHMN_10480	0.30	-0.8
1,965,385	-	acnB	OKFHMN_10480	0.30	-1.1
1,967,233	-				-2.6
1,967,285	-				+3.2
1,967,285	-				+0.4
1,967,389	+				+0.2
1,967,390	-				+0.6
1,967,491	+				-0.4
1,967,639	+				+1.2
1,967,641	+				-3.1
1,967,641	+				-1.0
1,967,642	-				+0.4
1,967,642	-				-0.6
1,967,642	-				-0.4
1,967,644	-				-0.3
1,967,645	+				+0.6
1,967,645	+				-0.6
1,967,646	-				-0.4
1,967,646	-				+0.5
1,967,646	-				+0.5
1,967,718	+				-0.2
1,967,793	-	yacH	OKFHMN_10485	0.13	-0.6
1,967,904	+	yacH	OKFHMN_10485	0.19	-0.6
1,967,913	+	yacH	OKFHMN_10485	0.19	-0.8
1,967,942	+	yacH	OKFHMN_10485	0.21	-0.6
1,967,971	-	yacH	OKFHMN_10485	0.22	+0.3
1,967,971	-	yacH	OKFHMN_10485	0.22	+1.2
1,968,083	+	yacH	OKFHMN_10485	0.28	-0.5