Strain Fitness in Escherichia coli ECRC100 around OKFHMN_10455

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
1,959,527	+	gcd	OKFHMN_10450	0.81	+1.0
1,959,528	-	gcd	OKFHMN_10450	0.81	+0.3
1,959,528	-	gcd	OKFHMN_10450	0.81	-0.1
1,959,528	-	gcd	OKFHMN_10450	0.81	+0.5
1,959,535	-	gcd	OKFHMN_10450	0.81	+0.3
1,959,539	+	gcd	OKFHMN_10450	0.81	-0.4
1,959,586	+	gcd	OKFHMN_10450	0.83	+1.3
1,959,586	+	gcd	OKFHMN_10450	0.83	+0.3
1,959,587	-	gcd	OKFHMN_10450	0.83	-0.0
1,959,587	-	gcd	OKFHMN_10450	0.83	+0.0
1,959,587	-	gcd	OKFHMN_10450	0.83	+1.2
1,959,605	+	gcd	OKFHMN_10450	0.84	+1.0
1,959,605	+	gcd	OKFHMN_10450	0.84	+0.8
1,959,605	+	gcd	OKFHMN_10450	0.84	-0.0
1,959,607	+	gcd	OKFHMN_10450	0.84	-0.0
1,959,607	+	gcd	OKFHMN_10450	0.84	+0.1
1,959,608	-	gcd	OKFHMN_10450	0.84	-1.5
1,959,608	-	gcd	OKFHMN_10450	0.84	+0.6
1,959,608	-	gcd	OKFHMN_10450	0.84	+0.7
1,959,676	+	gcd	OKFHMN_10450	0.87	-0.9
1,959,676	+	gcd	OKFHMN_10450	0.87	-0.4
1,959,676	+	gcd	OKFHMN_10450	0.87	-0.9
1,959,676	+	gcd	OKFHMN_10450	0.87	+0.1
1,959,677	-	gcd	OKFHMN_10450	0.87	-0.2
1,959,718	+	gcd	OKFHMN_10450	0.89	-0.6
1,959,718	+	gcd	OKFHMN_10450	0.89	-1.1
1,959,719	-	gcd	OKFHMN_10450	0.89	+0.1
1,959,784	+				+0.4
1,959,785	-				+0.9
1,959,788	+				+0.0
1,959,789	-				-1.1
1,959,800	+				+0.1
1,959,873	-				-0.6
1,959,873	-				+0.1
1,959,887	-				-0.2
1,959,893	+				+1.2
1,959,893	+				+0.6
1,959,894	-				+2.0
1,959,894	-				+0.0
1,959,947	+				-1.6
1,959,947	+				+0.4
1,959,948	-				+0.7
1,959,949	+				+1.0
1,959,949	+				+1.2
1,959,950	-				+0.3
1,959,950	-				+0.1
1,959,950	-				-0.5
1,959,950	-				+1.3
1,959,959	+				-0.5
1,959,959	+				+0.6
1,960,188	+				-0.3
1,960,195	+				-0.4
1,960,196	-				+0.5
1,960,249	+				+0.8
1,960,249	+				-1.3
1,960,250	-				-0.0
1,960,250	-				+0.1
1,960,251	+				-1.5
1,960,251	+				+0.6
1,960,252	-				+0.8
1,960,252	-				+0.8
1,960,252	-				+0.1
1,960,252	-				+1.3
1,960,252	-				+0.6
1,960,252	-				+0.5
1,960,252	-				+0.1
1,960,252	-				-0.6
1,960,252	-				+0.2
1,960,313	+				-0.3
1,960,324	+				+0.0
1,960,324	+				+0.2
1,960,378	+	cueO	OKFHMN_10455	0.12	-0.6
1,960,483	+	cueO	OKFHMN_10455	0.19	-0.1
1,960,484	-	cueO	OKFHMN_10455	0.19	-0.1
1,960,552	+	cueO	OKFHMN_10455	0.24	-0.4
1,960,553	-	cueO	OKFHMN_10455	0.24	+0.7
1,960,637	+	cueO	OKFHMN_10455	0.29	+0.5
1,960,658	-	cueO	OKFHMN_10455	0.30	-0.3
1,960,675	+	cueO	OKFHMN_10455	0.31	+0.1
1,960,695	-	cueO	OKFHMN_10455	0.33	-0.1
1,960,736	+	cueO	OKFHMN_10455	0.35	-0.2
1,960,736	+	cueO	OKFHMN_10455	0.35	-0.9
1,960,737	-	cueO	OKFHMN_10455	0.35	+0.3
1,960,737	-	cueO	OKFHMN_10455	0.35	-0.5
1,960,737	-	cueO	OKFHMN_10455	0.35	-0.6
1,960,737	-	cueO	OKFHMN_10455	0.35	-0.0
1,960,737	-	cueO	OKFHMN_10455	0.35	+0.2
1,960,737	-	cueO	OKFHMN_10455	0.35	+0.2
1,960,769	-	cueO	OKFHMN_10455	0.38	-0.2
1,960,975	-	cueO	OKFHMN_10455	0.51	+0.5
1,960,975	-	cueO	OKFHMN_10455	0.51	-0.1
1,960,975	-	cueO	OKFHMN_10455	0.51	-0.4
1,961,102	-	cueO	OKFHMN_10455	0.59	-0.2
1,961,168	-	cueO	OKFHMN_10455	0.63	+0.6
1,961,228	+	cueO	OKFHMN_10455	0.67	-0.9
1,961,329	+	cueO	OKFHMN_10455	0.74	+0.3
1,961,466	+	cueO	OKFHMN_10455	0.82	+0.4
1,961,466	+	cueO	OKFHMN_10455	0.82	+0.5
1,961,466	+	cueO	OKFHMN_10455	0.82	+0.3
1,961,466	+	cueO	OKFHMN_10455	0.82	+0.0
1,961,467	-	cueO	OKFHMN_10455	0.83	-0.2
1,961,470	+	cueO	OKFHMN_10455	0.83	+0.1
1,961,471	-	cueO	OKFHMN_10455	0.83	+0.2
1,961,542	+	cueO	OKFHMN_10455	0.87	-0.5
1,961,542	+	cueO	OKFHMN_10455	0.87	-0.1
1,961,543	-	cueO	OKFHMN_10455	0.87	-0.0
1,961,584	+				+0.5
1,961,588	+				-2.0
1,961,589	-				+0.1
1,961,742	-				+0.7
1,961,742	-				-0.0
1,961,787	+				-0.3
1,961,884	+				-0.1
1,961,895	+				-0.2
1,961,895	+				+0.1
1,961,896	-				+1.1
1,961,963	+				-2.5
1,961,992	+	yacC	OKFHMN_10460	0.16	-0.9
1,961,992	+	yacC	OKFHMN_10460	0.16	+0.2
1,962,051	+	yacC	OKFHMN_10460	0.35	-0.0
1,962,051	+	yacC	OKFHMN_10460	0.35	-1.3
1,962,120	-	yacC	OKFHMN_10460	0.58	+1.2
1,962,274	+				+0.5
1,962,301	+				-0.9
1,962,301	+				+1.2
1,962,302	-				-0.2
1,962,306	-				-0.2
1,962,306	-				+1.0
1,962,308	+				+0.8
1,962,309	-				-4.4
1,962,347	+				-0.8
1,962,388	-				+0.2
1,962,422	-				-2.2
1,962,422	-				-1.4
1,962,539	-	speE	OKFHMN_10465	0.21	-1.6
1,962,539	-	speE	OKFHMN_10465	0.21	-0.0
1,962,604	+	speE	OKFHMN_10465	0.29	+0.4
1,962,649	+	speE	OKFHMN_10465	0.34	+0.1
1,962,649	+	speE	OKFHMN_10465	0.34	-0.2
1,962,713	+	speE	OKFHMN_10465	0.41	-0.2