Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yahC and OKFHMN_09015 are separated by 91 nucleotides OKFHMN_09015 and OKFHMN_09020 overlap by 40 nucleotides OKFHMN_09020 and pdeL are separated by 41 nucleotides
OKFHMN_09010: yahC - Uncharacterized protein YahC, at 1,686,691 to 1,686,993
yahC
OKFHMN_09015: OKFHMN_09015 - HTH lysR-type domain-containing protein, at 1,687,085 to 1,687,795
_09015
OKFHMN_09020: OKFHMN_09020 - Putative transcriptional regulator LYSR-type, at 1,687,756 to 1,688,016
_09020
OKFHMN_09025: pdeL - Cyclic di-GMP phosphodiesterase PdeL, at 1,688,058 to 1,689,146
pdeL
Position (kb) 1687
1688
1689 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1686.770 kb on + strand, within yahC at 1686.918 kb on + strand, within yahC at 1686.998 kb on + strand at 1687.012 kb on + strand at 1687.012 kb on + strand at 1687.029 kb on + strand at 1687.036 kb on - strand at 1687.067 kb on - strand at 1687.176 kb on + strand, within OKFHMN_09015 at 1687.196 kb on + strand, within OKFHMN_09015 at 1687.196 kb on + strand, within OKFHMN_09015 at 1687.196 kb on + strand, within OKFHMN_09015 at 1687.284 kb on - strand, within OKFHMN_09015 at 1687.349 kb on - strand, within OKFHMN_09015 at 1687.362 kb on + strand, within OKFHMN_09015 at 1687.363 kb on - strand, within OKFHMN_09015 at 1687.400 kb on + strand, within OKFHMN_09015 at 1687.401 kb on - strand, within OKFHMN_09015 at 1687.429 kb on - strand, within OKFHMN_09015 at 1687.484 kb on + strand, within OKFHMN_09015 at 1687.525 kb on + strand, within OKFHMN_09015 at 1687.673 kb on - strand, within OKFHMN_09015 at 1687.677 kb on + strand, within OKFHMN_09015 at 1687.680 kb on + strand, within OKFHMN_09015 at 1687.681 kb on - strand, within OKFHMN_09015 at 1687.684 kb on - strand, within OKFHMN_09015 at 1687.822 kb on + strand, within OKFHMN_09020 at 1687.823 kb on - strand, within OKFHMN_09020 at 1687.973 kb on + strand, within OKFHMN_09020 at 1687.974 kb on - strand, within OKFHMN_09020 at 1687.987 kb on + strand, within OKFHMN_09020 at 1688.015 kb on - strand at 1688.015 kb on - strand at 1688.120 kb on - strand at 1688.125 kb on + strand at 1688.160 kb on + strand at 1688.235 kb on - strand, within pdeL at 1688.246 kb on + strand, within pdeL at 1688.291 kb on + strand, within pdeL at 1688.304 kb on - strand, within pdeL at 1688.336 kb on - strand, within pdeL at 1688.375 kb on + strand, within pdeL at 1688.376 kb on - strand, within pdeL at 1688.438 kb on + strand, within pdeL at 1688.439 kb on - strand, within pdeL at 1688.552 kb on + strand, within pdeL at 1688.642 kb on + strand, within pdeL at 1688.642 kb on + strand, within pdeL at 1688.913 kb on - strand, within pdeL at 1688.928 kb on - strand, within pdeL at 1688.930 kb on + strand, within pdeL at 1688.931 kb on - strand, within pdeL at 1688.956 kb on + strand, within pdeL
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 1,686,770 + yahC OKFHMN_09010 0.26 +0.1 1,686,918 + yahC OKFHMN_09010 0.75 +0.6 1,686,998 + -0.1 1,687,012 + -1.5 1,687,012 + -0.5 1,687,029 + +1.7 1,687,036 - +0.4 1,687,067 - -0.3 1,687,176 + OKFHMN_09015 0.13 -1.1 1,687,196 + OKFHMN_09015 0.16 +0.4 1,687,196 + OKFHMN_09015 0.16 -0.7 1,687,196 + OKFHMN_09015 0.16 +0.2 1,687,284 - OKFHMN_09015 0.28 -0.1 1,687,349 - OKFHMN_09015 0.37 -0.1 1,687,362 + OKFHMN_09015 0.39 -0.4 1,687,363 - OKFHMN_09015 0.39 -0.1 1,687,400 + OKFHMN_09015 0.44 -2.3 1,687,401 - OKFHMN_09015 0.44 +1.1 1,687,429 - OKFHMN_09015 0.48 -0.1 1,687,484 + OKFHMN_09015 0.56 +0.6 1,687,525 + OKFHMN_09015 0.62 -0.7 1,687,673 - OKFHMN_09015 0.83 +0.3 1,687,677 + OKFHMN_09015 0.83 -2.7 1,687,680 + OKFHMN_09015 0.84 +0.1 1,687,681 - OKFHMN_09015 0.84 -0.0 1,687,684 - OKFHMN_09015 0.84 -1.6 1,687,822 + OKFHMN_09020 0.25 +0.6 1,687,823 - OKFHMN_09020 0.26 +0.7 1,687,973 + OKFHMN_09020 0.83 +0.2 1,687,974 - OKFHMN_09020 0.84 -2.9 1,687,987 + OKFHMN_09020 0.89 -0.1 1,688,015 - -0.2 1,688,015 - +0.1 1,688,120 - +0.8 1,688,125 + +1.1 1,688,160 + +0.2 1,688,235 - pdeL OKFHMN_09025 0.16 +0.3 1,688,246 + pdeL OKFHMN_09025 0.17 +0.4 1,688,291 + pdeL OKFHMN_09025 0.21 -1.0 1,688,304 - pdeL OKFHMN_09025 0.23 +0.3 1,688,336 - pdeL OKFHMN_09025 0.26 -0.1 1,688,375 + pdeL OKFHMN_09025 0.29 +0.2 1,688,376 - pdeL OKFHMN_09025 0.29 -0.2 1,688,438 + pdeL OKFHMN_09025 0.35 +1.4 1,688,439 - pdeL OKFHMN_09025 0.35 +0.9 1,688,552 + pdeL OKFHMN_09025 0.45 +0.4 1,688,642 + pdeL OKFHMN_09025 0.54 -0.7 1,688,642 + pdeL OKFHMN_09025 0.54 -2.7 1,688,913 - pdeL OKFHMN_09025 0.79 +0.1 1,688,928 - pdeL OKFHMN_09025 0.80 -0.3 1,688,930 + pdeL OKFHMN_09025 0.80 +2.0 1,688,931 - pdeL OKFHMN_09025 0.80 +0.6 1,688,956 + pdeL OKFHMN_09025 0.82 +0.8
Or see this region's nucleotide sequence