Strain Fitness in Escherichia coli ECRC100 around OKFHMN_06845

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcydB and cydA are separated by 15 nucleotidescydA and OKFHMN_06850 are separated by 805 nucleotides OKFHMN_06840: cydB - cytochrome d ubiquinol oxidase subunit II, at 1,214,617 to 1,215,756 cydB OKFHMN_06845: cydA - cytochrome ubiquinol oxidase subunit I, at 1,215,772 to 1,217,340 cydA OKFHMN_06850: OKFHMN_06850 - hypothetical protein, at 1,218,146 to 1,219,090 _06850 Position (kb) 1215 1216 1217 1218Strain fitness (log2 ratio) -1 0 1at 1217.528 kb on - strandat 1217.561 kb on - strandat 1217.598 kb on - strandat 1217.633 kb on - strandat 1217.633 kb on - strandat 1217.848 kb on - strandat 1217.863 kb on + strandat 1217.864 kb on - strandat 1218.005 kb on - strandat 1218.087 kb on + strandat 1218.211 kb on - strandat 1218.320 kb on - strand, within OKFHMN_06850

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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1,217,528 - +0.7
1,217,561 - -0.4
1,217,598 - +1.0
1,217,633 - -0.4
1,217,633 - -1.4
1,217,848 - +0.1
1,217,863 + +1.1
1,217,864 - -0.5
1,218,005 - -0.4
1,218,087 + -0.0
1,218,211 - +0.4
1,218,320 - OKFHMN_06850 0.18 +0.6

Or see this region's nucleotide sequence