Strain Fitness in Escherichia coli ECRC100 around OKFHMN_05655

Experiment: Casamino-acids

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOKFHMN_05650 and rssA are separated by 339 nucleotidesrssA and OKFHMN_05660 overlap by 4 nucleotidesOKFHMN_05660 and OKFHMN_05665 overlap by 4 nucleotides OKFHMN_05650: OKFHMN_05650 - DUF945 domain-containing protein, at 963,298 to 964,116 _05650 OKFHMN_05655: rssA - phospholipase, at 964,456 to 965,526 rssA OKFHMN_05660: OKFHMN_05660 - chemotaxis protein, at 965,523 to 966,428 _05660 OKFHMN_05665: OKFHMN_05665 - dGTPase, at 966,425 to 968,809 _05665 Position (kb) 964 965 966Strain fitness (log2 ratio) -1 0 1at 963.659 kb on + strand, within OKFHMN_05650at 963.659 kb on + strand, within OKFHMN_05650at 963.660 kb on - strand, within OKFHMN_05650at 963.660 kb on - strand, within OKFHMN_05650at 965.469 kb on - strandat 966.379 kb on - strandat 966.470 kb on - strandat 966.515 kb on - strandat 966.515 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
remove
963,659 + OKFHMN_05650 0.44 +1.3
963,659 + OKFHMN_05650 0.44 -0.1
963,660 - OKFHMN_05650 0.44 -0.7
963,660 - OKFHMN_05650 0.44 +0.2
965,469 - -0.1
966,379 - +0.1
966,470 - -0.1
966,515 - +0.2
966,515 - -0.1

Or see this region's nucleotide sequence