Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt elfG and fimD overlap by 10 nucleotides fimD and OKFHMN_05325 are separated by 35 nucleotides OKFHMN_05325 and elfD are separated by 24 nucleotides
OKFHMN_05315: elfG - Uncharacterized fimbrial-like protein ElfG, at 883,910 to 884,890
elfG
OKFHMN_05320: fimD - fimbrial biogenesis usher protein, at 884,881 to 886,842
fimD
OKFHMN_05325: OKFHMN_05325 - PapC-N domain-containing protein, at 886,878 to 887,480
_05325
OKFHMN_05330: elfD - putative fimbrial chaperone protein ElfD, at 887,505 to 888,206
elfD
Position (kb) 884
885
886
887 Strain fitness (log2 ratio) -2
-1
0
1
2 at 883.973 kb on - strand at 884.040 kb on + strand, within elfG at 884.041 kb on - strand, within elfG at 884.152 kb on + strand, within elfG at 884.153 kb on - strand, within elfG at 884.263 kb on - strand, within elfG at 884.265 kb on + strand, within elfG at 884.265 kb on + strand, within elfG at 884.266 kb on - strand, within elfG at 884.320 kb on - strand, within elfG at 884.509 kb on + strand, within elfG at 884.587 kb on - strand, within elfG at 884.661 kb on + strand, within elfG at 884.662 kb on - strand, within elfG at 884.703 kb on - strand, within elfG at 884.823 kb on - strand at 884.852 kb on + strand at 884.856 kb on - strand at 884.990 kb on - strand at 885.044 kb on - strand at 885.044 kb on - strand at 885.197 kb on - strand, within fimD at 885.263 kb on + strand, within fimD at 885.264 kb on - strand, within fimD at 885.264 kb on - strand, within fimD at 885.288 kb on + strand, within fimD at 885.289 kb on - strand, within fimD at 885.438 kb on - strand, within fimD at 885.471 kb on - strand, within fimD at 885.510 kb on - strand, within fimD at 885.552 kb on + strand, within fimD at 885.553 kb on - strand, within fimD at 885.689 kb on + strand, within fimD at 885.690 kb on - strand, within fimD at 885.690 kb on - strand, within fimD at 885.694 kb on - strand, within fimD at 885.699 kb on + strand, within fimD at 885.700 kb on - strand, within fimD at 885.780 kb on + strand, within fimD at 885.780 kb on + strand, within fimD at 885.831 kb on - strand, within fimD at 885.917 kb on - strand, within fimD at 885.974 kb on + strand, within fimD at 886.105 kb on - strand, within fimD at 886.145 kb on + strand, within fimD at 886.362 kb on + strand, within fimD at 886.487 kb on - strand, within fimD at 886.515 kb on - strand, within fimD at 886.525 kb on - strand, within fimD at 886.720 kb on - strand at 886.918 kb on - strand at 887.010 kb on - strand, within OKFHMN_05325 at 887.475 kb on - strand at 887.477 kb on - strand at 887.492 kb on - strand at 887.542 kb on + strand at 887.820 kb on - strand, within elfD
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 883,973 - -1.0 884,040 + elfG OKFHMN_05315 0.13 -0.4 884,041 - elfG OKFHMN_05315 0.13 -0.7 884,152 + elfG OKFHMN_05315 0.25 +0.4 884,153 - elfG OKFHMN_05315 0.25 -2.5 884,263 - elfG OKFHMN_05315 0.36 +0.1 884,265 + elfG OKFHMN_05315 0.36 +0.0 884,265 + elfG OKFHMN_05315 0.36 +0.5 884,266 - elfG OKFHMN_05315 0.36 +0.3 884,320 - elfG OKFHMN_05315 0.42 +1.3 884,509 + elfG OKFHMN_05315 0.61 -0.8 884,587 - elfG OKFHMN_05315 0.69 -0.3 884,661 + elfG OKFHMN_05315 0.77 -0.2 884,662 - elfG OKFHMN_05315 0.77 -0.3 884,703 - elfG OKFHMN_05315 0.81 +0.9 884,823 - -1.4 884,852 + +1.4 884,856 - +0.3 884,990 - +0.4 885,044 - +1.7 885,044 - +1.2 885,197 - fimD OKFHMN_05320 0.16 -0.1 885,263 + fimD OKFHMN_05320 0.19 +1.8 885,264 - fimD OKFHMN_05320 0.20 -1.5 885,264 - fimD OKFHMN_05320 0.20 -0.6 885,288 + fimD OKFHMN_05320 0.21 -1.3 885,289 - fimD OKFHMN_05320 0.21 +0.3 885,438 - fimD OKFHMN_05320 0.28 +0.8 885,471 - fimD OKFHMN_05320 0.30 -1.0 885,510 - fimD OKFHMN_05320 0.32 -0.4 885,552 + fimD OKFHMN_05320 0.34 -0.1 885,553 - fimD OKFHMN_05320 0.34 -1.6 885,689 + fimD OKFHMN_05320 0.41 +1.5 885,690 - fimD OKFHMN_05320 0.41 -0.8 885,690 - fimD OKFHMN_05320 0.41 +0.3 885,694 - fimD OKFHMN_05320 0.41 -0.8 885,699 + fimD OKFHMN_05320 0.42 -0.0 885,700 - fimD OKFHMN_05320 0.42 +0.8 885,780 + fimD OKFHMN_05320 0.46 +0.6 885,780 + fimD OKFHMN_05320 0.46 -1.3 885,831 - fimD OKFHMN_05320 0.48 +0.6 885,917 - fimD OKFHMN_05320 0.53 -0.1 885,974 + fimD OKFHMN_05320 0.56 -0.1 886,105 - fimD OKFHMN_05320 0.62 -0.2 886,145 + fimD OKFHMN_05320 0.64 +1.0 886,362 + fimD OKFHMN_05320 0.75 +0.7 886,487 - fimD OKFHMN_05320 0.82 -0.3 886,515 - fimD OKFHMN_05320 0.83 +2.3 886,525 - fimD OKFHMN_05320 0.84 -0.1 886,720 - -0.8 886,918 - +0.1 887,010 - OKFHMN_05325 0.22 -1.0 887,475 - +0.6 887,477 - +2.0 887,492 - +0.2 887,542 + -2.0 887,820 - elfD OKFHMN_05330 0.45 +1.4
Or see this region's nucleotide sequence