Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt wrbA and yccJ are separated by 20 nucleotides yccJ and agp are separated by 37 nucleotides agp and OKFHMN_04670 are separated by 290 nucleotides OKFHMN_04670 and OKFHMN_04675 are separated by 109 nucleotides
OKFHMN_04655: wrbA - NAD(P)H:quinone oxidoreductase, at 769,965 to 770,561
wrbA
OKFHMN_04660: yccJ - Uncharacterized protein YccJ, at 770,582 to 770,809
yccJ
OKFHMN_04665: agp - bifunctional glucose-1-phosphatase/inositol phosphatase, at 770,847 to 772,088
agp
OKFHMN_04670: OKFHMN_04670 - YccE, at 772,379 to 772,627
_04670
OKFHMN_04675: OKFHMN_04675 - YccE, at 772,737 to 773,636
_04675
Position (kb) 770
771
772
773 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 769.865 kb on + strand at 769.904 kb on - strand at 769.944 kb on + strand at 770.228 kb on + strand, within wrbA at 770.228 kb on + strand, within wrbA at 770.272 kb on + strand, within wrbA at 770.297 kb on + strand, within wrbA at 770.526 kb on + strand at 770.526 kb on + strand at 770.527 kb on - strand at 770.547 kb on - strand at 770.638 kb on + strand, within yccJ at 770.639 kb on - strand, within yccJ at 770.652 kb on + strand, within yccJ at 770.734 kb on - strand, within yccJ at 770.979 kb on - strand, within agp at 770.983 kb on - strand, within agp at 770.983 kb on - strand, within agp at 771.002 kb on - strand, within agp at 771.110 kb on - strand, within agp at 771.166 kb on - strand, within agp at 771.166 kb on - strand, within agp at 771.166 kb on - strand, within agp at 771.221 kb on - strand, within agp at 771.393 kb on + strand, within agp at 771.446 kb on - strand, within agp at 771.519 kb on - strand, within agp at 771.521 kb on - strand, within agp at 771.547 kb on + strand, within agp at 771.690 kb on - strand, within agp at 771.761 kb on - strand, within agp at 771.801 kb on + strand, within agp at 771.835 kb on + strand, within agp at 771.848 kb on - strand, within agp at 771.848 kb on - strand, within agp at 772.190 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 769,865 + +1.2 769,904 - -1.3 769,944 + -0.8 770,228 + wrbA OKFHMN_04655 0.44 -0.3 770,228 + wrbA OKFHMN_04655 0.44 +0.8 770,272 + wrbA OKFHMN_04655 0.51 +0.3 770,297 + wrbA OKFHMN_04655 0.56 +0.1 770,526 + -0.2 770,526 + -0.7 770,527 - +0.4 770,547 - +0.5 770,638 + yccJ OKFHMN_04660 0.25 +0.3 770,639 - yccJ OKFHMN_04660 0.25 +0.3 770,652 + yccJ OKFHMN_04660 0.31 +0.1 770,734 - yccJ OKFHMN_04660 0.67 -0.4 770,979 - agp OKFHMN_04665 0.11 -0.1 770,983 - agp OKFHMN_04665 0.11 -2.9 770,983 - agp OKFHMN_04665 0.11 -0.8 771,002 - agp OKFHMN_04665 0.12 +0.2 771,110 - agp OKFHMN_04665 0.21 +0.2 771,166 - agp OKFHMN_04665 0.26 +0.9 771,166 - agp OKFHMN_04665 0.26 +0.7 771,166 - agp OKFHMN_04665 0.26 +0.8 771,221 - agp OKFHMN_04665 0.30 +0.5 771,393 + agp OKFHMN_04665 0.44 -1.4 771,446 - agp OKFHMN_04665 0.48 +0.8 771,519 - agp OKFHMN_04665 0.54 +0.7 771,521 - agp OKFHMN_04665 0.54 +0.2 771,547 + agp OKFHMN_04665 0.56 +1.4 771,690 - agp OKFHMN_04665 0.68 -2.6 771,761 - agp OKFHMN_04665 0.74 +0.3 771,801 + agp OKFHMN_04665 0.77 -1.8 771,835 + agp OKFHMN_04665 0.80 +0.4 771,848 - agp OKFHMN_04665 0.81 -0.1 771,848 - agp OKFHMN_04665 0.81 +0.2 772,190 - +0.5
Or see this region's nucleotide sequence