Strain Fitness in Escherichia coli ECRC100 around OKFHMN_04315

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntopgE and dgkA are separated by 92 nucleotidesdgkA and OKFHMN_04320 are separated by 685 nucleotides OKFHMN_04310: opgE - phosphoethanolamine transferase, at 687,814 to 689,433 opgE OKFHMN_04315: dgkA - Diacylglycerol kinase, at 689,526 to 689,885 dgkA OKFHMN_04320: OKFHMN_04320 - restriction endonuclease, at 690,571 to 690,861 _04320 Position (kb) 689 690Strain fitness (log2 ratio) -1 0 1at 688.798 kb on - strand, within opgEat 690.255 kb on - strandat 690.837 kb on + strandat 690.837 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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688,798 - opgE OKFHMN_04310 0.61 +1.0
690,255 - +0.3
690,837 + -0.2
690,837 + +0.3

Or see this region's nucleotide sequence