Strain Fitness in Escherichia coli ECRC100 around OKFHMN_03945

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_03935 and OKFHMN_03940 overlap by 4 nucleotidesOKFHMN_03940 and OKFHMN_03945 overlap by 4 nucleotidesOKFHMN_03945 and cah are separated by 110 nucleotides OKFHMN_03935: OKFHMN_03935 - phospholipase, at 624,644 to 625,714 _03935 OKFHMN_03940: OKFHMN_03940 - chemotaxis protein, at 625,711 to 626,616 _03940 OKFHMN_03945: OKFHMN_03945 - dGTPase, at 626,613 to 628,997 _03945 OKFHMN_03950: cah - calcium-binding autotransporter Cah, at 629,108 to 631,957 cah Position (kb) 626 627 628 629Strain fitness (log2 ratio) -3 -2 -1 0 1at 627.549 kb on - strand, within OKFHMN_03945at 627.636 kb on - strand, within OKFHMN_03945at 627.639 kb on - strand, within OKFHMN_03945at 627.685 kb on - strand, within OKFHMN_03945at 629.062 kb on + strandat 629.203 kb on + strandat 629.556 kb on + strand, within cahat 629.557 kb on - strand, within cahat 629.732 kb on + strand, within cahat 629.733 kb on - strand, within cah

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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627,549 - OKFHMN_03945 0.39 +0.7
627,636 - OKFHMN_03945 0.43 -0.6
627,639 - OKFHMN_03945 0.43 -0.6
627,685 - OKFHMN_03945 0.45 -0.4
629,062 + -0.1
629,203 + -0.4
629,556 + cah OKFHMN_03950 0.16 -2.9
629,557 - cah OKFHMN_03950 0.16 +0.1
629,732 + cah OKFHMN_03950 0.22 +1.1
629,733 - cah OKFHMN_03950 0.22 +0.5

Or see this region's nucleotide sequence