Strain Fitness in Escherichia coli ECRC100 around OKFHMN_03800

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmdoH and mdoG are separated by 22 nucleotidesmdoG and mdoC are separated by 425 nucleotides OKFHMN_03795: mdoH - glucans biosynthesis glucosyltransferase MdoH, at 603,560 to 606,073 mdoH OKFHMN_03800: mdoG - glucans biosynthesis protein MdoG, at 606,096 to 607,598 mdoG OKFHMN_03805: mdoC - glucans biosynthesis protein MdoC, at 608,024 to 609,181 mdoC Position (kb) 606 607 608Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 605.245 kb on - strand, within mdoHat 605.245 kb on - strand, within mdoHat 605.357 kb on - strand, within mdoHat 605.391 kb on - strand, within mdoHat 605.421 kb on - strand, within mdoHat 605.421 kb on - strand, within mdoHat 605.423 kb on - strand, within mdoHat 605.423 kb on - strand, within mdoHat 605.540 kb on - strand, within mdoHat 605.540 kb on - strand, within mdoHat 605.641 kb on - strand, within mdoHat 606.098 kb on - strandat 606.119 kb on - strandat 606.273 kb on - strand, within mdoGat 606.363 kb on - strand, within mdoGat 606.647 kb on - strand, within mdoGat 606.833 kb on - strand, within mdoGat 606.966 kb on - strand, within mdoGat 606.979 kb on + strand, within mdoGat 607.016 kb on - strand, within mdoGat 607.032 kb on - strand, within mdoGat 607.203 kb on - strand, within mdoGat 607.456 kb on + strandat 607.583 kb on + strandat 607.586 kb on - strandat 607.600 kb on - strandat 607.640 kb on + strandat 607.641 kb on - strandat 607.653 kb on + strandat 607.866 kb on + strandat 607.905 kb on + strandat 607.906 kb on - strandat 608.023 kb on + strandat 608.051 kb on + strandat 608.105 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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605,245 - mdoH OKFHMN_03795 0.67 -1.2
605,245 - mdoH OKFHMN_03795 0.67 -1.9
605,357 - mdoH OKFHMN_03795 0.71 -0.3
605,391 - mdoH OKFHMN_03795 0.73 +0.3
605,421 - mdoH OKFHMN_03795 0.74 +0.7
605,421 - mdoH OKFHMN_03795 0.74 +0.3
605,423 - mdoH OKFHMN_03795 0.74 +0.6
605,423 - mdoH OKFHMN_03795 0.74 +0.4
605,540 - mdoH OKFHMN_03795 0.79 -1.8
605,540 - mdoH OKFHMN_03795 0.79 -0.9
605,641 - mdoH OKFHMN_03795 0.83 -0.3
606,098 - +0.9
606,119 - -0.2
606,273 - mdoG OKFHMN_03800 0.12 +1.3
606,363 - mdoG OKFHMN_03800 0.18 +0.7
606,647 - mdoG OKFHMN_03800 0.37 -0.9
606,833 - mdoG OKFHMN_03800 0.49 -0.4
606,966 - mdoG OKFHMN_03800 0.58 +0.4
606,979 + mdoG OKFHMN_03800 0.59 -0.2
607,016 - mdoG OKFHMN_03800 0.61 +0.7
607,032 - mdoG OKFHMN_03800 0.62 +0.0
607,203 - mdoG OKFHMN_03800 0.74 -0.6
607,456 + +0.8
607,583 + -0.0
607,586 - -1.9
607,600 - +2.0
607,640 + +0.8
607,641 - -2.8
607,653 + +0.5
607,866 + +0.6
607,905 + -0.1
607,906 - +0.4
608,023 + -2.2
608,051 + -3.4
608,105 - -0.1

Or see this region's nucleotide sequence