Strain Fitness in Escherichia coli ECRC100 around OKFHMN_03360

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_03340 and OKFHMN_03345 are separated by 2 nucleotidesOKFHMN_03345 and OKFHMN_03350 are separated by 1 nucleotidesOKFHMN_03350 and OKFHMN_03355 overlap by 14 nucleotidesOKFHMN_03355 and OKFHMN_03360 overlap by 47 nucleotidesOKFHMN_03360 and OKFHMN_03365 overlap by 11 nucleotidesOKFHMN_03365 and OKFHMN_03370 overlap by 4 nucleotidesOKFHMN_03370 and OKFHMN_03375 overlap by 4 nucleotides OKFHMN_03340: OKFHMN_03340 - DUF551 domain-containing protein, at 525,408 to 525,995 _03340 OKFHMN_03345: OKFHMN_03345 - hypothetical protein, at 525,998 to 526,189 _03345 OKFHMN_03350: OKFHMN_03350 - Ead/Ea22-like protein, at 526,191 to 526,628 _03350 OKFHMN_03355: OKFHMN_03355 - hypothetical protein, at 526,615 to 526,932 _03355 OKFHMN_03360: OKFHMN_03360 - DUF4752 domain-containing protein, at 526,886 to 527,203 _03360 OKFHMN_03365: OKFHMN_03365 - DUF4406 domain-containing protein, at 527,193 to 527,495 _03365 OKFHMN_03370: OKFHMN_03370 - DNA-binding protein, at 527,492 to 527,809 _03370 OKFHMN_03375: OKFHMN_03375 - DUF1627 domain-containing protein, at 527,806 to 528,522 _03375 Position (kb) 526 527 528Strain fitness (log2 ratio) -3 -2 -1 0 1at 526.010 kb on - strandat 526.032 kb on - strand, within OKFHMN_03345at 526.236 kb on + strand, within OKFHMN_03350at 526.276 kb on - strand, within OKFHMN_03350at 526.276 kb on - strand, within OKFHMN_03350at 526.370 kb on + strand, within OKFHMN_03350at 526.713 kb on - strand, within OKFHMN_03355at 526.832 kb on - strand, within OKFHMN_03355at 526.832 kb on - strand, within OKFHMN_03355at 526.834 kb on - strand, within OKFHMN_03355at 526.863 kb on - strand, within OKFHMN_03355at 526.881 kb on - strand, within OKFHMN_03355at 526.965 kb on - strand, within OKFHMN_03360at 527.078 kb on - strand, within OKFHMN_03360at 527.128 kb on + strand, within OKFHMN_03360at 527.129 kb on - strand, within OKFHMN_03360at 527.300 kb on - strand, within OKFHMN_03365at 527.345 kb on - strand, within OKFHMN_03365at 527.345 kb on - strand, within OKFHMN_03365at 527.524 kb on - strand, within OKFHMN_03370at 527.769 kb on - strand, within OKFHMN_03370at 527.836 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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526,010 - +0.8
526,032 - OKFHMN_03345 0.18 +0.1
526,236 + OKFHMN_03350 0.10 -0.5
526,276 - OKFHMN_03350 0.19 -2.8
526,276 - OKFHMN_03350 0.19 +1.0
526,370 + OKFHMN_03350 0.41 -1.7
526,713 - OKFHMN_03355 0.31 +1.3
526,832 - OKFHMN_03355 0.68 +0.1
526,832 - OKFHMN_03355 0.68 -2.6
526,834 - OKFHMN_03355 0.69 -0.7
526,863 - OKFHMN_03355 0.78 +0.1
526,881 - OKFHMN_03355 0.84 -2.4
526,965 - OKFHMN_03360 0.25 -1.6
527,078 - OKFHMN_03360 0.60 -0.1
527,128 + OKFHMN_03360 0.76 +0.5
527,129 - OKFHMN_03360 0.76 -0.0
527,300 - OKFHMN_03365 0.35 +0.2
527,345 - OKFHMN_03365 0.50 +0.1
527,345 - OKFHMN_03365 0.50 -0.4
527,524 - OKFHMN_03370 0.10 +0.2
527,769 - OKFHMN_03370 0.87 +0.6
527,836 - -0.3

Or see this region's nucleotide sequence