Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_03325 and OKFHMN_03335 are separated by 188 nucleotides OKFHMN_03335 and OKFHMN_03340 are separated by 115 nucleotides OKFHMN_03340 and OKFHMN_03345 are separated by 2 nucleotides OKFHMN_03345 and OKFHMN_03350 are separated by 1 nucleotides OKFHMN_03350 and OKFHMN_03355 overlap by 14 nucleotides OKFHMN_03355 and OKFHMN_03360 overlap by 47 nucleotides
OKFHMN_03325: OKFHMN_03325 - protein hokC, at 524,787 to 524,999
_03325
OKFHMN_03335: OKFHMN_03335 - hypothetical protein, at 525,188 to 525,292
_03335
OKFHMN_03340: OKFHMN_03340 - DUF551 domain-containing protein, at 525,408 to 525,995
_03340
OKFHMN_03345: OKFHMN_03345 - hypothetical protein, at 525,998 to 526,189
_03345
OKFHMN_03350: OKFHMN_03350 - Ead/Ea22-like protein, at 526,191 to 526,628
_03350
OKFHMN_03355: OKFHMN_03355 - hypothetical protein, at 526,615 to 526,932
_03355
OKFHMN_03360: OKFHMN_03360 - DUF4752 domain-containing protein, at 526,886 to 527,203
_03360
Position (kb) 525
526 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 525.042 kb on + strand at 526.010 kb on - strand at 526.032 kb on - strand, within OKFHMN_03345 at 526.236 kb on + strand, within OKFHMN_03350 at 526.276 kb on - strand, within OKFHMN_03350 at 526.276 kb on - strand, within OKFHMN_03350 at 526.370 kb on + strand, within OKFHMN_03350 at 526.713 kb on - strand, within OKFHMN_03355 at 526.832 kb on - strand, within OKFHMN_03355 at 526.832 kb on - strand, within OKFHMN_03355 at 526.834 kb on - strand, within OKFHMN_03355 at 526.863 kb on - strand, within OKFHMN_03355 at 526.881 kb on - strand, within OKFHMN_03355 at 526.965 kb on - strand, within OKFHMN_03360
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 525,042 + -0.1 526,010 - +0.8 526,032 - OKFHMN_03345 0.18 +0.1 526,236 + OKFHMN_03350 0.10 -0.5 526,276 - OKFHMN_03350 0.19 -2.8 526,276 - OKFHMN_03350 0.19 +1.0 526,370 + OKFHMN_03350 0.41 -1.7 526,713 - OKFHMN_03355 0.31 +1.3 526,832 - OKFHMN_03355 0.68 +0.1 526,832 - OKFHMN_03355 0.68 -2.6 526,834 - OKFHMN_03355 0.69 -0.7 526,863 - OKFHMN_03355 0.78 +0.1 526,881 - OKFHMN_03355 0.84 -2.4 526,965 - OKFHMN_03360 0.25 -1.6
Or see this region's nucleotide sequence