Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_02080 and OKFHMN_02085 are separated by 96 nucleotides OKFHMN_02085 and OKFHMN_02090 are separated by 306 nucleotides OKFHMN_02090 and OKFHMN_02100 are separated by 411 nucleotides
OKFHMN_02080: OKFHMN_02080 - transcriptional regulator, at 315,230 to 315,472
_02080
OKFHMN_02085: OKFHMN_02085 - transcriptional regulator, at 315,569 to 315,988
_02085
OKFHMN_02090: OKFHMN_02090 - DUF1391 domain-containing protein, at 316,295 to 316,447
_02090
OKFHMN_02100: OKFHMN_02100 - transcriptional regulator, at 316,859 to 317,707
_02100
Position (kb) 316
317 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 315.326 kb on - strand, within OKFHMN_02080 at 315.407 kb on + strand, within OKFHMN_02080 at 315.407 kb on + strand, within OKFHMN_02080 at 315.970 kb on + strand at 316.114 kb on + strand at 316.157 kb on + strand at 316.158 kb on - strand at 316.188 kb on + strand at 316.208 kb on + strand at 316.208 kb on + strand at 316.208 kb on + strand at 316.332 kb on + strand, within OKFHMN_02090 at 316.382 kb on - strand, within OKFHMN_02090 at 316.584 kb on + strand at 316.622 kb on - strand at 316.992 kb on + strand, within OKFHMN_02100 at 317.139 kb on + strand, within OKFHMN_02100 at 317.167 kb on + strand, within OKFHMN_02100
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 315,326 - OKFHMN_02080 0.40 -2.9 315,407 + OKFHMN_02080 0.73 -4.0 315,407 + OKFHMN_02080 0.73 -0.8 315,970 + -0.8 316,114 + +0.3 316,157 + -0.2 316,158 - +0.8 316,188 + -0.0 316,208 + -0.4 316,208 + +0.3 316,208 + +0.5 316,332 + OKFHMN_02090 0.24 +1.5 316,382 - OKFHMN_02090 0.57 +0.1 316,584 + +0.3 316,622 - +0.4 316,992 + OKFHMN_02100 0.16 +0.1 317,139 + OKFHMN_02100 0.33 +0.5 317,167 + OKFHMN_02100 0.36 +0.1
Or see this region's nucleotide sequence