Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tehA and ydcK are separated by 123 nucleotides ydcK and rimL are separated by 234 nucleotides rimL and ydcH are separated by 62 nucleotides ydcH and opgD are separated by 139 nucleotides
OKFHMN_01625: tehA - dicarboxylate transporter/tellurite-resistance protein TehA, at 231,992 to 232,984
tehA
OKFHMN_01630: ydcK - YdcK family protein, at 233,108 to 234,088
ydcK
OKFHMN_01635: rimL - 50S ribosomal protein L7/L12-serine acetyltransferase, at 234,323 to 234,619
rimL
OKFHMN_01640: ydcH - Uncharacterized protein YdcH, at 234,682 to 234,906
ydcH
OKFHMN_01645: opgD - glucan biosynthesis protein OpgD, at 235,046 to 236,665
opgD
Position (kb) 233
234
235 Strain fitness (log2 ratio) -1
0
1 at 232.243 kb on - strand, within tehA at 232.574 kb on - strand, within tehA at 232.940 kb on - strand at 232.948 kb on - strand at 232.973 kb on - strand at 233.082 kb on + strand at 233.082 kb on + strand at 233.086 kb on - strand at 233.107 kb on + strand at 233.223 kb on + strand, within ydcK at 233.266 kb on - strand, within ydcK at 233.844 kb on + strand, within ydcK at 234.170 kb on - strand at 234.582 kb on - strand, within rimL at 234.850 kb on - strand, within ydcH at 234.937 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 232,243 - tehA OKFHMN_01625 0.25 +1.3 232,574 - tehA OKFHMN_01625 0.59 -0.8 232,940 - +0.0 232,948 - -0.5 232,973 - +1.0 233,082 + +1.1 233,082 + +0.6 233,086 - -1.0 233,107 + -0.4 233,223 + ydcK OKFHMN_01630 0.12 +0.9 233,266 - ydcK OKFHMN_01630 0.16 +0.7 233,844 + ydcK OKFHMN_01630 0.75 +1.1 234,170 - -1.4 234,582 - rimL OKFHMN_01635 0.87 +0.6 234,850 - ydcH OKFHMN_01640 0.75 -0.6 234,937 + -0.7
Or see this region's nucleotide sequence