Strain Fitness in Escherichia coli ECRC100 around OKFHMN_01300

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdigH and dosC are separated by 376 nucleotidesdosC and dosP are separated by 24 nucleotides OKFHMN_01295: digH - Glycosyl hydrolase DigH, at 160,988 to 162,307 digH OKFHMN_01300: dosC - diguanylate cyclase DosC, at 162,684 to 164,066 dosC OKFHMN_01305: dosP - oxygen-sensing cyclic-di-GMP phosphodiesterase, at 164,091 to 165,332 dosP Position (kb) 162 163 164 165Strain fitness (log2 ratio) -2 -1 0 1 2at 161.990 kb on + strand, within digHat 162.246 kb on - strandat 162.281 kb on + strandat 162.305 kb on + strandat 162.615 kb on + strandat 162.671 kb on - strandat 163.194 kb on - strand, within dosCat 163.301 kb on - strand, within dosCat 163.318 kb on + strand, within dosCat 163.710 kb on - strand, within dosCat 164.086 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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161,990 + digH OKFHMN_01295 0.76 +0.3
162,246 - +2.0
162,281 + -0.1
162,305 + -1.5
162,615 + -1.8
162,671 - -1.4
163,194 - dosC OKFHMN_01300 0.37 +0.3
163,301 - dosC OKFHMN_01300 0.45 -0.1
163,318 + dosC OKFHMN_01300 0.46 +0.8
163,710 - dosC OKFHMN_01300 0.74 +0.2
164,086 + -0.3

Or see this region's nucleotide sequence