Strain Fitness in Escherichia coli ECRC62 around BNILDI_21980

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfepD and fepG overlap by 4 nucleotidesfepG and fepC overlap by 4 nucleotidesfepC and fepE overlap by 4 nucleotides BNILDI_21975: fepD - ferrienterobactin ABC transporter permease, at 4,417,599 to 4,418,603 fepD BNILDI_21980: fepG - iron-enterobactin ABC transporter permease, at 4,418,600 to 4,419,592 fepG BNILDI_21985: fepC - ferrienterobactin ABC transporter ATPase, at 4,419,589 to 4,420,404 fepC BNILDI_21990: fepE - LPS O-antigen length regulator, at 4,420,401 to 4,421,534 fepE Position (kb) 4418 4419 4420Strain fitness (log2 ratio) -3 -2 -1 0 1at 4417.801 kb on + strand, within fepDat 4418.051 kb on - strand, within fepDat 4418.180 kb on + strand, within fepDat 4418.180 kb on + strand, within fepDat 4418.181 kb on - strand, within fepDat 4418.185 kb on + strand, within fepDat 4418.314 kb on + strand, within fepDat 4418.315 kb on - strand, within fepDat 4418.419 kb on + strand, within fepDat 4418.420 kb on - strand, within fepDat 4418.420 kb on - strand, within fepDat 4418.583 kb on - strandat 4418.749 kb on + strand, within fepGat 4419.082 kb on + strand, within fepGat 4419.082 kb on + strand, within fepGat 4419.199 kb on + strand, within fepGat 4419.499 kb on + strandat 4419.646 kb on + strandat 4419.648 kb on + strandat 4419.678 kb on - strand, within fepCat 4419.724 kb on - strand, within fepCat 4419.808 kb on + strand, within fepCat 4419.817 kb on - strand, within fepCat 4419.927 kb on + strand, within fepCat 4419.928 kb on - strand, within fepCat 4420.081 kb on - strand, within fepCat 4420.081 kb on - strand, within fepCat 4420.134 kb on - strand, within fepCat 4420.174 kb on - strand, within fepCat 4420.200 kb on + strand, within fepCat 4420.309 kb on + strand, within fepCat 4420.398 kb on + strandat 4420.407 kb on + strandat 4420.408 kb on - strandat 4420.408 kb on - strandat 4420.408 kb on - strandat 4420.408 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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4,417,801 + fepD BNILDI_21975 0.20 -0.7
4,418,051 - fepD BNILDI_21975 0.45 -0.6
4,418,180 + fepD BNILDI_21975 0.58 -0.3
4,418,180 + fepD BNILDI_21975 0.58 +0.4
4,418,181 - fepD BNILDI_21975 0.58 -1.1
4,418,185 + fepD BNILDI_21975 0.58 +0.8
4,418,314 + fepD BNILDI_21975 0.71 +0.2
4,418,315 - fepD BNILDI_21975 0.71 -0.8
4,418,419 + fepD BNILDI_21975 0.82 -0.3
4,418,420 - fepD BNILDI_21975 0.82 -3.0
4,418,420 - fepD BNILDI_21975 0.82 -0.4
4,418,583 - -0.8
4,418,749 + fepG BNILDI_21980 0.15 -0.1
4,419,082 + fepG BNILDI_21980 0.49 -0.7
4,419,082 + fepG BNILDI_21980 0.49 +0.5
4,419,199 + fepG BNILDI_21980 0.60 -1.1
4,419,499 + -0.2
4,419,646 + -0.5
4,419,648 + -0.4
4,419,678 - fepC BNILDI_21985 0.11 -1.4
4,419,724 - fepC BNILDI_21985 0.17 -0.1
4,419,808 + fepC BNILDI_21985 0.27 +0.3
4,419,817 - fepC BNILDI_21985 0.28 -2.9
4,419,927 + fepC BNILDI_21985 0.41 -0.7
4,419,928 - fepC BNILDI_21985 0.42 -1.6
4,420,081 - fepC BNILDI_21985 0.60 -2.8
4,420,081 - fepC BNILDI_21985 0.60 -0.6
4,420,134 - fepC BNILDI_21985 0.67 -1.0
4,420,174 - fepC BNILDI_21985 0.72 -2.4
4,420,200 + fepC BNILDI_21985 0.75 +1.2
4,420,309 + fepC BNILDI_21985 0.88 -1.0
4,420,398 + -0.3
4,420,407 + -0.5
4,420,408 - -0.2
4,420,408 - +0.1
4,420,408 - -0.0
4,420,408 - -0.2

Or see this region's nucleotide sequence