Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt citC and BNILDI_21835 are separated by 14 nucleotides BNILDI_21835 and citE overlap by 4 nucleotides citE and citF are separated by 10 nucleotides
BNILDI_21830: citC - [citrate (pro-3S)-lyase] ligase, at 4,388,049 to 4,389,107
citC
BNILDI_21835: BNILDI_21835 - citrate lyase acyl carrier protein 1, at 4,389,122 to 4,389,418
_21835
BNILDI_21840: citE - citrate (pro-3S)-lyase subunit beta, at 4,389,415 to 4,390,323
citE
BNILDI_21845: citF - citrate lyase subunit alpha, at 4,390,334 to 4,391,866
citF
Position (kb) 4389
4390 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4388.161 kb on + strand, within citC at 4388.165 kb on + strand, within citC at 4388.165 kb on + strand, within citC at 4388.220 kb on - strand, within citC at 4388.222 kb on + strand, within citC at 4388.226 kb on - strand, within citC at 4388.238 kb on - strand, within citC at 4388.238 kb on - strand, within citC at 4388.330 kb on + strand, within citC at 4388.337 kb on - strand, within citC at 4388.350 kb on - strand, within citC at 4388.584 kb on + strand, within citC at 4388.705 kb on + strand, within citC at 4388.718 kb on + strand, within citC at 4388.719 kb on - strand, within citC at 4388.745 kb on - strand, within citC at 4388.754 kb on + strand, within citC at 4388.755 kb on - strand, within citC at 4388.787 kb on + strand, within citC at 4388.860 kb on - strand, within citC at 4388.860 kb on - strand, within citC at 4389.042 kb on + strand at 4389.346 kb on - strand, within BNILDI_21835 at 4389.442 kb on - strand at 4389.514 kb on + strand, within citE at 4389.514 kb on + strand, within citE at 4389.515 kb on - strand, within citE at 4389.561 kb on - strand, within citE at 4389.593 kb on - strand, within citE at 4389.914 kb on - strand, within citE at 4389.931 kb on - strand, within citE
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 4,388,161 + citC BNILDI_21830 0.11 +0.1 4,388,165 + citC BNILDI_21830 0.11 +0.8 4,388,165 + citC BNILDI_21830 0.11 +0.2 4,388,220 - citC BNILDI_21830 0.16 +0.3 4,388,222 + citC BNILDI_21830 0.16 +0.2 4,388,226 - citC BNILDI_21830 0.17 -0.2 4,388,238 - citC BNILDI_21830 0.18 -0.8 4,388,238 - citC BNILDI_21830 0.18 +0.7 4,388,330 + citC BNILDI_21830 0.27 +1.2 4,388,337 - citC BNILDI_21830 0.27 -1.5 4,388,350 - citC BNILDI_21830 0.28 +0.3 4,388,584 + citC BNILDI_21830 0.51 -1.1 4,388,705 + citC BNILDI_21830 0.62 +0.8 4,388,718 + citC BNILDI_21830 0.63 +0.4 4,388,719 - citC BNILDI_21830 0.63 -1.1 4,388,745 - citC BNILDI_21830 0.66 -0.1 4,388,754 + citC BNILDI_21830 0.67 -1.9 4,388,755 - citC BNILDI_21830 0.67 +0.2 4,388,787 + citC BNILDI_21830 0.70 +0.8 4,388,860 - citC BNILDI_21830 0.77 -0.0 4,388,860 - citC BNILDI_21830 0.77 +0.2 4,389,042 + -0.6 4,389,346 - BNILDI_21835 0.75 -1.7 4,389,442 - -2.8 4,389,514 + citE BNILDI_21840 0.11 -0.5 4,389,514 + citE BNILDI_21840 0.11 -0.5 4,389,515 - citE BNILDI_21840 0.11 +0.4 4,389,561 - citE BNILDI_21840 0.16 +0.2 4,389,593 - citE BNILDI_21840 0.20 +1.7 4,389,914 - citE BNILDI_21840 0.55 +0.0 4,389,931 - citE BNILDI_21840 0.57 +0.3
Or see this region's nucleotide sequence