Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dacA and ybeD are separated by 110 nucleotides ybeD and lipB are separated by 100 nucleotides lipB and ybeF are separated by 258 nucleotides
BNILDI_21765: dacA - D-alanyl-D-alanine carboxypeptidase DacA, at 4,375,939 to 4,377,150
dacA
BNILDI_21770: ybeD - DUF493 domain-containing protein, at 4,377,261 to 4,377,524
ybeD
BNILDI_21775: lipB - lipoyl(octanoyl) transferase LipB, at 4,377,625 to 4,378,266
lipB
BNILDI_21780: ybeF - YbeF family transcriptional regulator, at 4,378,525 to 4,379,478
ybeF
Position (kb) 4377
4378
4379 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4376.754 kb on + strand, within dacA at 4376.760 kb on + strand, within dacA at 4376.761 kb on - strand, within dacA at 4376.761 kb on - strand, within dacA at 4376.959 kb on + strand, within dacA at 4376.960 kb on - strand, within dacA at 4376.960 kb on - strand, within dacA at 4377.171 kb on + strand at 4377.188 kb on + strand at 4377.191 kb on + strand at 4377.237 kb on + strand at 4377.237 kb on + strand at 4377.582 kb on + strand at 4377.582 kb on + strand at 4377.583 kb on - strand at 4377.599 kb on + strand at 4377.670 kb on + strand at 4377.670 kb on + strand at 4377.892 kb on - strand, within lipB at 4378.310 kb on - strand at 4378.467 kb on + strand at 4378.468 kb on - strand at 4378.644 kb on - strand, within ybeF at 4378.646 kb on - strand, within ybeF at 4378.734 kb on - strand, within ybeF at 4378.807 kb on + strand, within ybeF at 4378.807 kb on + strand, within ybeF at 4378.807 kb on + strand, within ybeF at 4378.808 kb on - strand, within ybeF at 4378.808 kb on - strand, within ybeF at 4378.810 kb on - strand, within ybeF at 4378.861 kb on + strand, within ybeF at 4378.862 kb on - strand, within ybeF at 4378.885 kb on - strand, within ybeF at 4378.964 kb on + strand, within ybeF at 4379.096 kb on + strand, within ybeF at 4379.129 kb on + strand, within ybeF at 4379.130 kb on - strand, within ybeF at 4379.169 kb on - strand, within ybeF at 4379.257 kb on + strand, within ybeF
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 4,376,754 + dacA BNILDI_21765 0.67 +0.5 4,376,760 + dacA BNILDI_21765 0.68 +1.2 4,376,761 - dacA BNILDI_21765 0.68 -2.4 4,376,761 - dacA BNILDI_21765 0.68 +0.1 4,376,959 + dacA BNILDI_21765 0.84 +1.0 4,376,960 - dacA BNILDI_21765 0.84 -0.3 4,376,960 - dacA BNILDI_21765 0.84 +0.0 4,377,171 + +1.8 4,377,188 + -0.8 4,377,191 + +1.0 4,377,237 + +0.3 4,377,237 + -2.0 4,377,582 + -1.2 4,377,582 + -1.4 4,377,583 - -0.1 4,377,599 + -0.2 4,377,670 + -1.6 4,377,670 + -2.7 4,377,892 - lipB BNILDI_21775 0.42 -3.9 4,378,310 - -0.8 4,378,467 + +0.6 4,378,468 - +1.0 4,378,644 - ybeF BNILDI_21780 0.12 -0.6 4,378,646 - ybeF BNILDI_21780 0.13 +0.0 4,378,734 - ybeF BNILDI_21780 0.22 +0.4 4,378,807 + ybeF BNILDI_21780 0.30 -0.3 4,378,807 + ybeF BNILDI_21780 0.30 +0.8 4,378,807 + ybeF BNILDI_21780 0.30 -0.5 4,378,808 - ybeF BNILDI_21780 0.30 -2.1 4,378,808 - ybeF BNILDI_21780 0.30 +0.2 4,378,810 - ybeF BNILDI_21780 0.30 -0.0 4,378,861 + ybeF BNILDI_21780 0.35 +0.6 4,378,862 - ybeF BNILDI_21780 0.35 +0.8 4,378,885 - ybeF BNILDI_21780 0.38 -1.0 4,378,964 + ybeF BNILDI_21780 0.46 -1.6 4,379,096 + ybeF BNILDI_21780 0.60 +0.4 4,379,129 + ybeF BNILDI_21780 0.63 -0.4 4,379,130 - ybeF BNILDI_21780 0.63 +0.2 4,379,169 - ybeF BNILDI_21780 0.68 -0.5 4,379,257 + ybeF BNILDI_21780 0.77 +1.5
Or see this region's nucleotide sequence