Strain Fitness in Escherichia coli ECRC62 around BNILDI_21400

Experiment: Sodium-DL-Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sodium-DL-Lactate
4,303,677	+	dtpD	BNILDI_21395	0.38	+0.3
4,303,677	+	dtpD	BNILDI_21395	0.38	-0.3
4,303,677	+	dtpD	BNILDI_21395	0.38	-0.0
4,303,678	-	dtpD	BNILDI_21395	0.38	+1.8
4,303,702	+	dtpD	BNILDI_21395	0.39	-0.3
4,303,725	+	dtpD	BNILDI_21395	0.41	-1.8
4,303,726	-	dtpD	BNILDI_21395	0.41	+0.8
4,303,726	-	dtpD	BNILDI_21395	0.41	-1.9
4,303,754	-	dtpD	BNILDI_21395	0.43	-0.3
4,303,806	+	dtpD	BNILDI_21395	0.46	+0.0
4,303,833	-	dtpD	BNILDI_21395	0.48	-0.1
4,303,833	-	dtpD	BNILDI_21395	0.48	+1.0
4,303,839	+	dtpD	BNILDI_21395	0.48	-0.7
4,303,839	+	dtpD	BNILDI_21395	0.48	+0.2
4,303,839	+	dtpD	BNILDI_21395	0.48	-0.5
4,303,840	-	dtpD	BNILDI_21395	0.49	-0.1
4,303,840	-	dtpD	BNILDI_21395	0.49	+0.7
4,303,951	+	dtpD	BNILDI_21395	0.56	+0.8
4,303,993	+	dtpD	BNILDI_21395	0.59	+0.1
4,304,000	+	dtpD	BNILDI_21395	0.59	-1.8
4,304,000	+	dtpD	BNILDI_21395	0.59	+0.4
4,304,000	+	dtpD	BNILDI_21395	0.59	-0.2
4,304,000	+	dtpD	BNILDI_21395	0.59	-0.2
4,304,001	-	dtpD	BNILDI_21395	0.59	+0.9
4,304,036	+	dtpD	BNILDI_21395	0.62	-1.2
4,304,039	-	dtpD	BNILDI_21395	0.62	-0.3
4,304,039	-	dtpD	BNILDI_21395	0.62	+1.7
4,304,039	-	dtpD	BNILDI_21395	0.62	+0.9
4,304,053	+	dtpD	BNILDI_21395	0.63	+1.5
4,304,053	+	dtpD	BNILDI_21395	0.63	-0.3
4,304,054	-	dtpD	BNILDI_21395	0.63	-0.4
4,304,083	+	dtpD	BNILDI_21395	0.65	-0.5
4,304,234	+	dtpD	BNILDI_21395	0.75	+0.1
4,304,326	+	dtpD	BNILDI_21395	0.81	+0.8
4,304,358	+	dtpD	BNILDI_21395	0.83	-0.4
4,304,372	+	dtpD	BNILDI_21395	0.84	-0.3
4,304,372	+	dtpD	BNILDI_21395	0.84	-0.6
4,304,373	-	dtpD	BNILDI_21395	0.84	+0.3
4,304,373	-	dtpD	BNILDI_21395	0.84	+0.1
4,304,402	+	dtpD	BNILDI_21395	0.86	+0.3
4,304,403	-	dtpD	BNILDI_21395	0.87	-0.4
4,304,469	-				+0.2
4,304,469	-				+0.2
4,304,469	-				+0.1
4,304,483	+				+1.3
4,304,483	+				+0.4
4,304,483	+				+0.1
4,304,484	-				-1.4
4,304,484	-				+1.1
4,304,485	+				-0.0
4,304,486	-				+0.5
4,304,486	-				+0.2
4,304,494	-				-0.1
4,304,600	+				+0.7
4,304,601	-				+0.1
4,304,603	+				+0.4
4,304,603	+				+0.5
4,304,711	-				+0.2
4,304,785	+				-1.3
4,304,785	+				-0.2
4,304,898	+	phrB	BNILDI_21400	0.18	+0.5
4,304,899	-	phrB	BNILDI_21400	0.18	+1.1
4,304,899	-	phrB	BNILDI_21400	0.18	+0.2
4,304,928	+	phrB	BNILDI_21400	0.20	-0.5
4,305,021	+	phrB	BNILDI_21400	0.27	-1.1
4,305,022	-	phrB	BNILDI_21400	0.27	+1.0
4,305,022	-	phrB	BNILDI_21400	0.27	+0.6
4,305,200	+	phrB	BNILDI_21400	0.39	+0.4
4,305,200	+	phrB	BNILDI_21400	0.39	+0.7
4,305,200	+	phrB	BNILDI_21400	0.39	+0.2
4,305,200	+	phrB	BNILDI_21400	0.39	+0.4
4,305,201	-	phrB	BNILDI_21400	0.39	+0.0
4,305,201	-	phrB	BNILDI_21400	0.39	-0.2
4,305,201	-	phrB	BNILDI_21400	0.39	+0.5
4,305,201	-	phrB	BNILDI_21400	0.39	+0.0
4,305,201	-	phrB	BNILDI_21400	0.39	-0.6
4,305,201	-	phrB	BNILDI_21400	0.39	-0.3
4,305,201	-	phrB	BNILDI_21400	0.39	-1.1
4,305,243	+	phrB	BNILDI_21400	0.42	-0.2
4,305,396	-	phrB	BNILDI_21400	0.53	+0.3
4,305,492	-	phrB	BNILDI_21400	0.60	-1.9
4,305,532	-	phrB	BNILDI_21400	0.63	+0.1
4,305,601	-	phrB	BNILDI_21400	0.67	+0.8
4,305,620	+	phrB	BNILDI_21400	0.69	+0.4
4,305,697	-	phrB	BNILDI_21400	0.74	-1.1
4,305,747	-	phrB	BNILDI_21400	0.78	-0.5
4,305,752	+	phrB	BNILDI_21400	0.78	-0.7
4,305,752	+	phrB	BNILDI_21400	0.78	+0.8
4,305,757	-	phrB	BNILDI_21400	0.78	-1.0
4,305,798	+	phrB	BNILDI_21400	0.81	-0.1
4,305,803	-	phrB	BNILDI_21400	0.82	-0.9
4,305,927	+				-0.1
4,305,928	-				-0.1
4,305,928	-				+1.6
4,305,952	-				-0.0
4,305,957	+				-1.3
4,305,958	-				+0.8
4,305,960	-				+0.5
4,305,961	+				-0.1
4,305,962	-				+0.3
4,305,962	-				+0.3
4,305,962	-				-0.2
4,306,062	+				+1.3
4,306,062	+				-0.5
4,306,111	+	ybgA	BNILDI_21405	0.10	-0.2
4,306,153	+	ybgA	BNILDI_21405	0.18	+0.8
4,306,153	+	ybgA	BNILDI_21405	0.18	+0.3
4,306,153	+	ybgA	BNILDI_21405	0.18	-0.4
4,306,153	+	ybgA	BNILDI_21405	0.18	-3.4
4,306,154	-	ybgA	BNILDI_21405	0.19	+0.0
4,306,163	+	ybgA	BNILDI_21405	0.20	+0.6
4,306,332	+	ybgA	BNILDI_21405	0.54	+0.2
4,306,346	-	ybgA	BNILDI_21405	0.56	+0.3
4,306,449	-	ybgA	BNILDI_21405	0.76	-0.2
4,306,451	-	ybgA	BNILDI_21405	0.77	+0.2
4,306,536	+				-3.6
4,306,595	+				+0.3
4,306,595	+				+0.9
4,306,596	-				+0.1
4,306,631	-				-0.4
4,306,631	-				+0.3
4,306,641	+				-0.1
4,306,705	-				+0.2
4,306,907	-	yhhI	BNILDI_21410	0.29	+0.3
4,306,986	-	yhhI	BNILDI_21410	0.40	-0.8