Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pgl and ybhA are separated by 154 nucleotides ybhA and modC are separated by 0 nucleotides modC and modC are separated by 2 nucleotides modC and modA overlap by 1 nucleotides
BNILDI_21100: pgl - 6-phosphogluconolactonase, at 4,246,461 to 4,247,456
pgl
BNILDI_21105: ybhA - bifunctional pyridoxal phosphate/fructose-1,6-bisphosphate phosphatase, at 4,247,611 to 4,248,429
ybhA
BNILDI_21110: modC - molybdenum ABC transporter ATP-binding protein ModC, at 4,248,430 to 4,249,488
modC
BNILDI_21115: modC - molybdenum ABC transporter ATP-binding protein ModC, at 4,249,491 to 4,250,180
modC
BNILDI_21120: modA - molybdate ABC transporter substrate-binding protein, at 4,250,180 to 4,250,953
modA
Position (kb) 4248
4249
4250 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4247.475 kb on - strand at 4247.475 kb on - strand at 4247.487 kb on + strand at 4247.528 kb on + strand at 4247.564 kb on + strand at 4247.565 kb on - strand at 4247.640 kb on - strand at 4247.688 kb on - strand at 4247.726 kb on + strand, within ybhA at 4247.726 kb on + strand, within ybhA at 4247.726 kb on + strand, within ybhA at 4247.824 kb on + strand, within ybhA at 4247.929 kb on + strand, within ybhA at 4247.929 kb on + strand, within ybhA at 4247.930 kb on - strand, within ybhA at 4247.930 kb on - strand, within ybhA at 4247.930 kb on - strand, within ybhA at 4247.951 kb on - strand, within ybhA at 4247.951 kb on - strand, within ybhA at 4247.951 kb on - strand, within ybhA at 4248.213 kb on + strand, within ybhA at 4248.214 kb on - strand, within ybhA at 4248.214 kb on - strand, within ybhA at 4248.381 kb on + strand at 4248.412 kb on + strand at 4248.415 kb on - strand at 4248.427 kb on + strand at 4248.428 kb on - strand at 4248.534 kb on + strand at 4248.583 kb on - strand, within modC at 4248.585 kb on + strand, within modC at 4248.673 kb on - strand, within modC at 4248.706 kb on - strand, within modC at 4248.831 kb on + strand, within modC at 4248.832 kb on - strand, within modC at 4248.938 kb on + strand, within modC at 4248.938 kb on + strand, within modC at 4248.938 kb on + strand, within modC at 4248.939 kb on - strand, within modC at 4248.939 kb on - strand, within modC at 4248.939 kb on - strand, within modC at 4248.939 kb on - strand, within modC at 4248.939 kb on - strand, within modC at 4248.939 kb on - strand, within modC at 4249.285 kb on - strand, within modC at 4249.304 kb on - strand, within modC at 4249.304 kb on - strand, within modC at 4249.571 kb on + strand, within modC at 4249.572 kb on - strand, within modC at 4249.624 kb on + strand, within modC at 4249.624 kb on + strand, within modC at 4249.624 kb on + strand, within modC at 4249.625 kb on - strand, within modC at 4249.625 kb on - strand, within modC at 4249.625 kb on - strand, within modC at 4249.733 kb on + strand, within modC at 4249.733 kb on + strand, within modC at 4249.734 kb on - strand, within modC at 4249.734 kb on - strand, within modC at 4249.734 kb on - strand, within modC at 4249.734 kb on - strand, within modC at 4249.763 kb on + strand, within modC at 4249.923 kb on - strand, within modC at 4249.923 kb on - strand, within modC at 4249.925 kb on + strand, within modC at 4249.980 kb on + strand, within modC at 4249.987 kb on - strand, within modC at 4249.991 kb on - strand, within modC at 4250.031 kb on + strand, within modC at 4250.077 kb on - strand, within modC at 4250.181 kb on + strand at 4250.181 kb on + strand at 4250.182 kb on - strand at 4250.182 kb on - strand at 4250.244 kb on + strand at 4250.269 kb on + strand, within modA at 4250.462 kb on - strand, within modA
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 4,247,475 - +0.1 4,247,475 - -1.9 4,247,487 + +0.8 4,247,528 + -1.3 4,247,564 + +0.1 4,247,565 - +0.1 4,247,640 - +0.0 4,247,688 - -0.1 4,247,726 + ybhA BNILDI_21105 0.14 +0.3 4,247,726 + ybhA BNILDI_21105 0.14 -0.0 4,247,726 + ybhA BNILDI_21105 0.14 +0.0 4,247,824 + ybhA BNILDI_21105 0.26 +2.5 4,247,929 + ybhA BNILDI_21105 0.39 -0.4 4,247,929 + ybhA BNILDI_21105 0.39 +0.1 4,247,930 - ybhA BNILDI_21105 0.39 +0.5 4,247,930 - ybhA BNILDI_21105 0.39 +0.8 4,247,930 - ybhA BNILDI_21105 0.39 -1.6 4,247,951 - ybhA BNILDI_21105 0.42 +0.5 4,247,951 - ybhA BNILDI_21105 0.42 -0.9 4,247,951 - ybhA BNILDI_21105 0.42 +0.3 4,248,213 + ybhA BNILDI_21105 0.74 -1.2 4,248,214 - ybhA BNILDI_21105 0.74 -1.0 4,248,214 - ybhA BNILDI_21105 0.74 +0.3 4,248,381 + -0.4 4,248,412 + -1.2 4,248,415 - +0.4 4,248,427 + +0.0 4,248,428 - +0.0 4,248,534 + -0.0 4,248,583 - modC BNILDI_21110 0.14 +0.5 4,248,585 + modC BNILDI_21110 0.15 -0.4 4,248,673 - modC BNILDI_21110 0.23 +0.8 4,248,706 - modC BNILDI_21110 0.26 +1.0 4,248,831 + modC BNILDI_21110 0.38 +0.8 4,248,832 - modC BNILDI_21110 0.38 +1.3 4,248,938 + modC BNILDI_21110 0.48 +0.5 4,248,938 + modC BNILDI_21110 0.48 +1.0 4,248,938 + modC BNILDI_21110 0.48 -0.3 4,248,939 - modC BNILDI_21110 0.48 +1.6 4,248,939 - modC BNILDI_21110 0.48 +0.2 4,248,939 - modC BNILDI_21110 0.48 +0.4 4,248,939 - modC BNILDI_21110 0.48 -0.1 4,248,939 - modC BNILDI_21110 0.48 -2.6 4,248,939 - modC BNILDI_21110 0.48 -1.2 4,249,285 - modC BNILDI_21110 0.81 +0.9 4,249,304 - modC BNILDI_21110 0.83 +0.2 4,249,304 - modC BNILDI_21110 0.83 +1.8 4,249,571 + modC BNILDI_21115 0.12 -1.6 4,249,572 - modC BNILDI_21115 0.12 -1.1 4,249,624 + modC BNILDI_21115 0.19 +0.2 4,249,624 + modC BNILDI_21115 0.19 -1.7 4,249,624 + modC BNILDI_21115 0.19 -0.0 4,249,625 - modC BNILDI_21115 0.19 +3.1 4,249,625 - modC BNILDI_21115 0.19 +0.3 4,249,625 - modC BNILDI_21115 0.19 +2.3 4,249,733 + modC BNILDI_21115 0.35 -1.4 4,249,733 + modC BNILDI_21115 0.35 +0.7 4,249,734 - modC BNILDI_21115 0.35 -0.0 4,249,734 - modC BNILDI_21115 0.35 -0.6 4,249,734 - modC BNILDI_21115 0.35 -0.4 4,249,734 - modC BNILDI_21115 0.35 +0.1 4,249,763 + modC BNILDI_21115 0.39 +0.4 4,249,923 - modC BNILDI_21115 0.63 +0.7 4,249,923 - modC BNILDI_21115 0.63 -0.5 4,249,925 + modC BNILDI_21115 0.63 -1.4 4,249,980 + modC BNILDI_21115 0.71 -0.9 4,249,987 - modC BNILDI_21115 0.72 +0.5 4,249,991 - modC BNILDI_21115 0.72 +0.2 4,250,031 + modC BNILDI_21115 0.78 +0.0 4,250,077 - modC BNILDI_21115 0.85 -1.6 4,250,181 + +0.4 4,250,181 + +0.7 4,250,182 - -0.0 4,250,182 - -1.1 4,250,244 + -0.1 4,250,269 + modA BNILDI_21120 0.11 +0.8 4,250,462 - modA BNILDI_21120 0.36 -0.2
Or see this region's nucleotide sequence