Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt serS and rarA are separated by 90 nucleotides rarA and lolA are separated by 10 nucleotides lolA and ftsK are separated by 154 nucleotides
BNILDI_20380: serS - serine--tRNA ligase, at 4,100,955 to 4,102,247
serS
BNILDI_20385: rarA - replication-associated recombination protein RarA, at 4,102,338 to 4,103,681
rarA
BNILDI_20390: lolA - outer membrane lipoprotein chaperone LolA, at 4,103,692 to 4,104,303
lolA
BNILDI_20395: ftsK - DNA translocase FtsK, at 4,104,458 to 4,108,564
ftsK
Position (kb) 4102
4103
4104 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4102.353 kb on + strand at 4102.362 kb on - strand at 4102.438 kb on + strand at 4102.486 kb on + strand, within rarA at 4102.487 kb on - strand, within rarA at 4102.546 kb on - strand, within rarA at 4102.586 kb on - strand, within rarA at 4102.633 kb on + strand, within rarA at 4102.633 kb on + strand, within rarA at 4102.813 kb on + strand, within rarA at 4102.814 kb on - strand, within rarA at 4102.814 kb on - strand, within rarA at 4102.892 kb on + strand, within rarA at 4102.893 kb on - strand, within rarA at 4102.893 kb on - strand, within rarA at 4102.893 kb on - strand, within rarA at 4102.974 kb on + strand, within rarA at 4103.004 kb on - strand, within rarA at 4103.047 kb on - strand, within rarA at 4103.160 kb on + strand, within rarA at 4103.164 kb on - strand, within rarA at 4103.164 kb on - strand, within rarA at 4103.203 kb on + strand, within rarA at 4103.204 kb on - strand, within rarA at 4103.294 kb on + strand, within rarA at 4103.294 kb on + strand, within rarA at 4103.294 kb on + strand, within rarA at 4103.294 kb on + strand, within rarA at 4103.295 kb on - strand, within rarA at 4103.295 kb on - strand, within rarA at 4103.295 kb on - strand, within rarA at 4103.441 kb on + strand, within rarA at 4103.441 kb on + strand, within rarA at 4103.525 kb on + strand, within rarA at 4103.526 kb on - strand, within rarA at 4103.526 kb on - strand, within rarA at 4103.526 kb on - strand, within rarA at 4103.599 kb on + strand at 4103.649 kb on - strand at 4103.694 kb on - strand at 4103.697 kb on + strand at 4103.697 kb on + strand at 4103.697 kb on + strand at 4103.698 kb on - strand at 4103.698 kb on - strand at 4104.319 kb on + strand at 4104.348 kb on - strand at 4104.355 kb on - strand at 4104.410 kb on + strand at 4104.411 kb on - strand at 4104.455 kb on + strand at 4104.456 kb on - strand at 4104.456 kb on - strand at 4104.460 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 4,102,353 + -0.9 4,102,362 - -0.2 4,102,438 + -0.6 4,102,486 + rarA BNILDI_20385 0.11 -1.6 4,102,487 - rarA BNILDI_20385 0.11 +0.3 4,102,546 - rarA BNILDI_20385 0.15 -1.0 4,102,586 - rarA BNILDI_20385 0.18 +0.4 4,102,633 + rarA BNILDI_20385 0.22 +0.1 4,102,633 + rarA BNILDI_20385 0.22 -0.2 4,102,813 + rarA BNILDI_20385 0.35 -0.3 4,102,814 - rarA BNILDI_20385 0.35 +0.1 4,102,814 - rarA BNILDI_20385 0.35 +0.8 4,102,892 + rarA BNILDI_20385 0.41 +0.8 4,102,893 - rarA BNILDI_20385 0.41 +1.1 4,102,893 - rarA BNILDI_20385 0.41 +0.7 4,102,893 - rarA BNILDI_20385 0.41 +0.9 4,102,974 + rarA BNILDI_20385 0.47 +0.3 4,103,004 - rarA BNILDI_20385 0.50 +0.0 4,103,047 - rarA BNILDI_20385 0.53 +0.4 4,103,160 + rarA BNILDI_20385 0.61 +0.1 4,103,164 - rarA BNILDI_20385 0.61 -0.3 4,103,164 - rarA BNILDI_20385 0.61 -0.7 4,103,203 + rarA BNILDI_20385 0.64 -0.4 4,103,204 - rarA BNILDI_20385 0.64 +2.3 4,103,294 + rarA BNILDI_20385 0.71 +0.8 4,103,294 + rarA BNILDI_20385 0.71 +0.7 4,103,294 + rarA BNILDI_20385 0.71 +1.0 4,103,294 + rarA BNILDI_20385 0.71 -0.1 4,103,295 - rarA BNILDI_20385 0.71 -0.9 4,103,295 - rarA BNILDI_20385 0.71 -0.3 4,103,295 - rarA BNILDI_20385 0.71 -0.2 4,103,441 + rarA BNILDI_20385 0.82 +0.1 4,103,441 + rarA BNILDI_20385 0.82 -0.9 4,103,525 + rarA BNILDI_20385 0.88 +0.2 4,103,526 - rarA BNILDI_20385 0.88 -1.9 4,103,526 - rarA BNILDI_20385 0.88 +0.4 4,103,526 - rarA BNILDI_20385 0.88 -0.4 4,103,599 + +0.3 4,103,649 - -1.5 4,103,694 - -0.5 4,103,697 + -0.1 4,103,697 + -1.0 4,103,697 + +1.3 4,103,698 - -0.8 4,103,698 - -0.6 4,104,319 + -0.0 4,104,348 - -3.0 4,104,355 - -0.4 4,104,410 + -1.4 4,104,411 - -2.5 4,104,455 + -0.2 4,104,456 - +0.3 4,104,456 - -0.3 4,104,460 - -0.6
Or see this region's nucleotide sequence