Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ycaI and ihfB are separated by 206 nucleotides ihfB and rpsA are separated by 159 nucleotides
BNILDI_20275: ycaI - ComEC family protein, at 4,075,090 to 4,077,354
ycaI
BNILDI_20280: ihfB - integration host factor subunit beta, at 4,077,561 to 4,077,845
ihfB
BNILDI_20285: rpsA - 30S ribosomal protein S1, at 4,078,005 to 4,079,678
rpsA
Position (kb)
4077
4078 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4076.609 kb on + strand, within ycaI at 4076.712 kb on + strand, within ycaI at 4076.781 kb on + strand, within ycaI at 4076.784 kb on - strand, within ycaI at 4076.832 kb on + strand, within ycaI at 4076.929 kb on - strand, within ycaI at 4076.929 kb on - strand, within ycaI at 4077.039 kb on + strand, within ycaI at 4077.039 kb on + strand, within ycaI at 4077.040 kb on - strand, within ycaI at 4077.040 kb on - strand, within ycaI at 4077.040 kb on - strand, within ycaI at 4077.040 kb on - strand, within ycaI at 4077.040 kb on - strand, within ycaI at 4077.052 kb on + strand, within ycaI at 4077.053 kb on - strand, within ycaI at 4077.061 kb on - strand, within ycaI at 4077.071 kb on + strand, within ycaI at 4077.134 kb on - strand at 4077.170 kb on - strand at 4077.172 kb on + strand at 4077.173 kb on - strand at 4077.209 kb on + strand at 4077.210 kb on - strand at 4077.325 kb on + strand at 4077.326 kb on - strand at 4077.326 kb on - strand at 4077.346 kb on + strand at 4077.569 kb on - strand at 4077.605 kb on + strand, within ihfB at 4078.017 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 4,076,609 + ycaI BNILDI_20275 0.67 -0.1 4,076,712 + ycaI BNILDI_20275 0.72 -0.2 4,076,781 + ycaI BNILDI_20275 0.75 +0.5 4,076,784 - ycaI BNILDI_20275 0.75 -0.1 4,076,832 + ycaI BNILDI_20275 0.77 +0.0 4,076,929 - ycaI BNILDI_20275 0.81 -1.1 4,076,929 - ycaI BNILDI_20275 0.81 +2.8 4,077,039 + ycaI BNILDI_20275 0.86 -2.5 4,077,039 + ycaI BNILDI_20275 0.86 -0.8 4,077,040 - ycaI BNILDI_20275 0.86 -1.2 4,077,040 - ycaI BNILDI_20275 0.86 +0.2 4,077,040 - ycaI BNILDI_20275 0.86 -0.0 4,077,040 - ycaI BNILDI_20275 0.86 +0.5 4,077,040 - ycaI BNILDI_20275 0.86 -0.5 4,077,052 + ycaI BNILDI_20275 0.87 -0.8 4,077,053 - ycaI BNILDI_20275 0.87 -0.1 4,077,061 - ycaI BNILDI_20275 0.87 -0.1 4,077,071 + ycaI BNILDI_20275 0.87 -0.3 4,077,134 - +1.3 4,077,170 - +0.2 4,077,172 + -0.4 4,077,173 - +0.2 4,077,209 + -0.1 4,077,210 - -1.5 4,077,325 + +0.1 4,077,326 - +0.9 4,077,326 - +0.2 4,077,346 + -0.3 4,077,569 - -1.1 4,077,605 + ihfB BNILDI_20280 0.15 -0.1 4,078,017 - -1.1
Or see this region's nucleotide sequence