Strain Fitness in Escherichia coli ECRC62 around BNILDI_18970

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntminC and minD are separated by 23 nucleotidesminD and minE are separated by 3 nucleotidesminE and BNILDI_18975 are separated by 371 nucleotides BNILDI_18960: minC - septum site-determining protein MinC, at 3,813,178 to 3,813,873 minC BNILDI_18965: minD - septum site-determining protein MinD, at 3,813,897 to 3,814,709 minD BNILDI_18970: minE - cell division topological specificity factor MinE, at 3,814,713 to 3,814,979 minE BNILDI_18975: BNILDI_18975 - autotransporter outer membrane beta-barrel domain-containing protein, at 3,815,351 to 3,815,677 _18975 Position (kb) 3814 3815Strain fitness (log2 ratio) -3 -2 -1 0 1at 3813.909 kb on - strandat 3814.127 kb on + strand, within minDat 3814.296 kb on + strand, within minDat 3814.296 kb on + strand, within minDat 3814.297 kb on - strand, within minDat 3814.847 kb on + strand, within minEat 3815.001 kb on - strandat 3815.072 kb on + strandat 3815.122 kb on + strandat 3815.154 kb on + strandat 3815.155 kb on - strandat 3815.522 kb on - strand, within BNILDI_18975at 3815.643 kb on + strand, within BNILDI_18975at 3815.687 kb on + strandat 3815.697 kb on + strandat 3815.713 kb on + strandat 3815.714 kb on - strandat 3815.714 kb on - strandat 3815.714 kb on - strandat 3815.783 kb on + strandat 3815.783 kb on + strandat 3815.875 kb on + strandat 3815.876 kb on - strandat 3815.905 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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3,813,909 - -0.1
3,814,127 + minD BNILDI_18965 0.28 -0.0
3,814,296 + minD BNILDI_18965 0.49 -0.0
3,814,296 + minD BNILDI_18965 0.49 -0.3
3,814,297 - minD BNILDI_18965 0.49 -0.5
3,814,847 + minE BNILDI_18970 0.50 -1.4
3,815,001 - +0.1
3,815,072 + +0.7
3,815,122 + +0.1
3,815,154 + +0.0
3,815,155 - +0.0
3,815,522 - BNILDI_18975 0.52 -0.8
3,815,643 + BNILDI_18975 0.89 +0.9
3,815,687 + +1.1
3,815,697 + +0.6
3,815,713 + -2.8
3,815,714 - +0.8
3,815,714 - +1.2
3,815,714 - -0.1
3,815,783 + +1.0
3,815,783 + +0.7
3,815,875 + -0.2
3,815,876 - -1.1
3,815,905 - +0.8

Or see this region's nucleotide sequence