Strain Fitness in Escherichia coli ECRC62 around BNILDI_18610

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttdk and hns are separated by 604 nucleotideshns and galU are separated by 143 nucleotides BNILDI_18605: tdk - thymidine kinase, at 3,745,450 to 3,746,067 tdk BNILDI_18610: hns - DNA-binding transcriptional regulator H-NS, at 3,746,672 to 3,747,085 hns BNILDI_18615: galU - UTP--glucose-1-phosphate uridylyltransferase GalU, at 3,747,229 to 3,748,137 galU Position (kb) 3746 3747 3748Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3745.679 kb on + strand, within tdkat 3745.679 kb on + strand, within tdkat 3745.777 kb on + strand, within tdkat 3745.778 kb on - strand, within tdkat 3745.959 kb on + strand, within tdkat 3745.959 kb on + strand, within tdkat 3745.960 kb on - strand, within tdkat 3745.960 kb on - strand, within tdkat 3745.961 kb on + strand, within tdkat 3745.963 kb on + strand, within tdkat 3745.964 kb on - strand, within tdkat 3745.998 kb on - strand, within tdkat 3746.055 kb on - strandat 3746.095 kb on + strandat 3746.118 kb on - strandat 3746.160 kb on + strandat 3746.161 kb on - strandat 3746.163 kb on - strandat 3746.210 kb on + strandat 3746.324 kb on + strandat 3746.338 kb on + strandat 3746.400 kb on - strandat 3746.966 kb on + strand, within hnsat 3746.966 kb on + strand, within hnsat 3747.052 kb on + strandat 3747.157 kb on + strandat 3747.157 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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3,745,679 + tdk BNILDI_18605 0.37 +0.5
3,745,679 + tdk BNILDI_18605 0.37 -1.0
3,745,777 + tdk BNILDI_18605 0.53 +0.6
3,745,778 - tdk BNILDI_18605 0.53 -0.3
3,745,959 + tdk BNILDI_18605 0.82 -0.5
3,745,959 + tdk BNILDI_18605 0.82 +0.2
3,745,960 - tdk BNILDI_18605 0.83 +0.2
3,745,960 - tdk BNILDI_18605 0.83 -3.5
3,745,961 + tdk BNILDI_18605 0.83 +1.4
3,745,963 + tdk BNILDI_18605 0.83 +0.1
3,745,964 - tdk BNILDI_18605 0.83 -1.0
3,745,998 - tdk BNILDI_18605 0.89 +1.7
3,746,055 - +0.5
3,746,095 + -0.2
3,746,118 - +0.1
3,746,160 + -1.1
3,746,161 - +0.7
3,746,163 - -0.2
3,746,210 + +0.6
3,746,324 + +0.1
3,746,338 + +1.0
3,746,400 - -0.6
3,746,966 + hns BNILDI_18610 0.71 -1.4
3,746,966 + hns BNILDI_18610 0.71 -3.8
3,747,052 + -1.6
3,747,157 + +0.4
3,747,157 + -0.1

Or see this region's nucleotide sequence