Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cysB and BNILDI_18420 are separated by 209 nucleotides BNILDI_18420 and yciN are separated by 379 nucleotides yciN and sohB are separated by 35 nucleotides
BNILDI_18415: cysB - HTH-type transcriptional regulator CysB, at 3,708,000 to 3,708,974
cysB
BNILDI_18420: BNILDI_18420 - type I DNA topoisomerase, at 3,709,184 to 3,711,781
_18420
BNILDI_18425: yciN - Protein YciN, at 3,712,161 to 3,712,412
yciN
BNILDI_18430: sohB - protease SohB, at 3,712,448 to 3,713,497
sohB
Position (kb) 3709
3710
3711
3712 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3708.384 kb on - strand, within cysB at 3709.099 kb on + strand at 3709.101 kb on + strand at 3709.102 kb on - strand at 3709.121 kb on + strand at 3709.179 kb on - strand at 3709.266 kb on + strand at 3709.266 kb on + strand at 3709.266 kb on + strand at 3709.267 kb on - strand at 3709.267 kb on - strand at 3709.306 kb on + strand at 3709.476 kb on + strand, within BNILDI_18420 at 3709.562 kb on - strand, within BNILDI_18420 at 3709.600 kb on - strand, within BNILDI_18420 at 3709.600 kb on - strand, within BNILDI_18420 at 3709.679 kb on - strand, within BNILDI_18420 at 3712.022 kb on - strand at 3712.051 kb on + strand at 3712.052 kb on - strand at 3712.104 kb on + strand at 3712.105 kb on - strand at 3712.105 kb on - strand at 3712.105 kb on - strand at 3712.130 kb on + strand at 3712.155 kb on + strand at 3712.159 kb on + strand at 3712.160 kb on - strand at 3712.160 kb on - strand at 3712.291 kb on + strand, within yciN at 3712.291 kb on + strand, within yciN at 3712.292 kb on - strand, within yciN at 3712.355 kb on + strand, within yciN at 3712.358 kb on + strand, within yciN at 3712.359 kb on - strand, within yciN at 3712.359 kb on - strand, within yciN at 3712.359 kb on - strand, within yciN at 3712.359 kb on - strand, within yciN at 3712.359 kb on - strand, within yciN at 3712.552 kb on + strand at 3712.553 kb on - strand, within sohB at 3712.554 kb on + strand, within sohB at 3712.554 kb on + strand, within sohB at 3712.554 kb on + strand, within sohB at 3712.554 kb on + strand, within sohB at 3712.559 kb on + strand, within sohB at 3712.559 kb on + strand, within sohB at 3712.560 kb on - strand, within sohB at 3712.560 kb on - strand, within sohB at 3712.560 kb on - strand, within sohB at 3712.560 kb on - strand, within sohB at 3712.597 kb on + strand, within sohB at 3712.705 kb on + strand, within sohB
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 3,708,384 - cysB BNILDI_18415 0.39 -2.4 3,709,099 + -0.5 3,709,101 + +0.4 3,709,102 - +0.7 3,709,121 + +0.4 3,709,179 - +1.9 3,709,266 + -0.8 3,709,266 + +0.7 3,709,266 + -1.0 3,709,267 - -0.6 3,709,267 - +0.6 3,709,306 + -1.3 3,709,476 + BNILDI_18420 0.11 -1.3 3,709,562 - BNILDI_18420 0.15 +1.8 3,709,600 - BNILDI_18420 0.16 -2.4 3,709,600 - BNILDI_18420 0.16 -1.2 3,709,679 - BNILDI_18420 0.19 -0.5 3,712,022 - -0.3 3,712,051 + -0.2 3,712,052 - +0.7 3,712,104 + +0.1 3,712,105 - +0.2 3,712,105 - -1.2 3,712,105 - +0.6 3,712,130 + -0.4 3,712,155 + -0.3 3,712,159 + +0.1 3,712,160 - -0.5 3,712,160 - -0.1 3,712,291 + yciN BNILDI_18425 0.52 -0.9 3,712,291 + yciN BNILDI_18425 0.52 +0.1 3,712,292 - yciN BNILDI_18425 0.52 +0.5 3,712,355 + yciN BNILDI_18425 0.77 -0.4 3,712,358 + yciN BNILDI_18425 0.78 -0.5 3,712,359 - yciN BNILDI_18425 0.79 +0.2 3,712,359 - yciN BNILDI_18425 0.79 -0.5 3,712,359 - yciN BNILDI_18425 0.79 +0.0 3,712,359 - yciN BNILDI_18425 0.79 -0.6 3,712,359 - yciN BNILDI_18425 0.79 -1.5 3,712,552 + +2.0 3,712,553 - sohB BNILDI_18430 0.10 -0.0 3,712,554 + sohB BNILDI_18430 0.10 -1.0 3,712,554 + sohB BNILDI_18430 0.10 +0.0 3,712,554 + sohB BNILDI_18430 0.10 +0.6 3,712,554 + sohB BNILDI_18430 0.10 +0.1 3,712,559 + sohB BNILDI_18430 0.11 -0.5 3,712,559 + sohB BNILDI_18430 0.11 +0.3 3,712,560 - sohB BNILDI_18430 0.11 +0.3 3,712,560 - sohB BNILDI_18430 0.11 -0.0 3,712,560 - sohB BNILDI_18430 0.11 +0.8 3,712,560 - sohB BNILDI_18430 0.11 +0.6 3,712,597 + sohB BNILDI_18430 0.14 -0.9 3,712,705 + sohB BNILDI_18430 0.24 +1.2
Or see this region's nucleotide sequence