Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt flhA and flhe overlap by 1 nucleotides flhe and yecT are separated by 119 nucleotides yecT and yecV are separated by 90 nucleotides yecV and argS are separated by 41 nucleotides
BNILDI_15400: flhA - flagellar biosynthesis protein FlhA, at 3,096,815 to 3,098,893
flhA
BNILDI_15405: flhe - flagellar protein FlhE, at 3,098,893 to 3,099,285
flhe
BNILDI_15410: yecT - Uncharacterized protein YecT, at 3,099,405 to 3,099,893
yecT
BNILDI_15415: yecV - Protein YecV, at 3,099,984 to 3,100,028
yecV
BNILDI_15420: argS - arginine--tRNA ligase, at 3,100,070 to 3,101,803
argS
Position (kb)
3098
3099
3100 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3097.972 kb on + strand, within flhA at 3097.974 kb on + strand, within flhA at 3098.223 kb on + strand, within flhA at 3098.291 kb on - strand, within flhA at 3098.644 kb on - strand, within flhA at 3098.646 kb on + strand, within flhA at 3098.784 kb on + strand at 3098.820 kb on + strand at 3098.860 kb on + strand at 3098.892 kb on - strand at 3098.892 kb on - strand at 3098.904 kb on - strand at 3098.912 kb on + strand at 3098.912 kb on + strand at 3098.915 kb on + strand at 3098.916 kb on - strand at 3098.968 kb on - strand, within flhe at 3098.968 kb on - strand, within flhe at 3098.968 kb on - strand, within flhe at 3098.968 kb on - strand, within flhe at 3098.973 kb on - strand, within flhe at 3098.979 kb on + strand, within flhe at 3099.252 kb on - strand at 3099.314 kb on - strand at 3099.319 kb on + strand at 3099.371 kb on + strand at 3099.487 kb on - strand, within yecT at 3099.495 kb on - strand, within yecT at 3099.825 kb on + strand, within yecT at 3099.826 kb on - strand, within yecT at 3099.826 kb on - strand, within yecT at 3099.874 kb on - strand at 3100.001 kb on - strand, within yecV at 3100.007 kb on - strand, within yecV at 3100.035 kb on - strand at 3100.072 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 3,097,972 + flhA BNILDI_15400 0.56 +0.1 3,097,974 + flhA BNILDI_15400 0.56 +0.2 3,098,223 + flhA BNILDI_15400 0.68 -0.0 3,098,291 - flhA BNILDI_15400 0.71 +1.2 3,098,644 - flhA BNILDI_15400 0.88 +1.5 3,098,646 + flhA BNILDI_15400 0.88 +0.5 3,098,784 + +0.6 3,098,820 + +0.0 3,098,860 + -3.5 3,098,892 - -0.4 3,098,892 - -1.3 3,098,904 - -1.6 3,098,912 + +1.2 3,098,912 + -2.1 3,098,915 + -1.4 3,098,916 - +0.2 3,098,968 - flhe BNILDI_15405 0.19 -0.7 3,098,968 - flhe BNILDI_15405 0.19 +0.8 3,098,968 - flhe BNILDI_15405 0.19 -1.1 3,098,968 - flhe BNILDI_15405 0.19 +0.8 3,098,973 - flhe BNILDI_15405 0.20 -0.2 3,098,979 + flhe BNILDI_15405 0.22 -1.1 3,099,252 - -1.5 3,099,314 - -1.0 3,099,319 + -0.3 3,099,371 + -1.4 3,099,487 - yecT BNILDI_15410 0.17 -0.3 3,099,495 - yecT BNILDI_15410 0.18 +0.0 3,099,825 + yecT BNILDI_15410 0.86 -0.4 3,099,826 - yecT BNILDI_15410 0.86 +0.1 3,099,826 - yecT BNILDI_15410 0.86 -0.7 3,099,874 - -0.8 3,100,001 - yecV BNILDI_15415 0.38 +0.5 3,100,007 - yecV BNILDI_15415 0.51 -0.9 3,100,035 - -0.8 3,100,072 - -0.4
Or see this region's nucleotide sequence