Strain Fitness in Escherichia coli ECRC62 around BNILDI_15405

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntflhA and flhe overlap by 1 nucleotidesflhe and yecT are separated by 119 nucleotidesyecT and yecV are separated by 90 nucleotidesyecV and argS are separated by 41 nucleotides BNILDI_15400: flhA - flagellar biosynthesis protein FlhA, at 3,096,815 to 3,098,893 flhA BNILDI_15405: flhe - flagellar protein FlhE, at 3,098,893 to 3,099,285 flhe BNILDI_15410: yecT - Uncharacterized protein YecT, at 3,099,405 to 3,099,893 yecT BNILDI_15415: yecV - Protein YecV, at 3,099,984 to 3,100,028 yecV BNILDI_15420: argS - arginine--tRNA ligase, at 3,100,070 to 3,101,803 argS Position (kb) 3098 3099 3100Strain fitness (log2 ratio) -3 -2 -1 0 1at 3097.972 kb on + strand, within flhAat 3097.974 kb on + strand, within flhAat 3098.223 kb on + strand, within flhAat 3098.291 kb on - strand, within flhAat 3098.644 kb on - strand, within flhAat 3098.646 kb on + strand, within flhAat 3098.784 kb on + strandat 3098.820 kb on + strandat 3098.860 kb on + strandat 3098.892 kb on - strandat 3098.892 kb on - strandat 3098.904 kb on - strandat 3098.912 kb on + strandat 3098.912 kb on + strandat 3098.915 kb on + strandat 3098.916 kb on - strandat 3098.968 kb on - strand, within flheat 3098.968 kb on - strand, within flheat 3098.968 kb on - strand, within flheat 3098.968 kb on - strand, within flheat 3098.973 kb on - strand, within flheat 3098.979 kb on + strand, within flheat 3099.252 kb on - strandat 3099.314 kb on - strandat 3099.319 kb on + strandat 3099.371 kb on + strandat 3099.487 kb on - strand, within yecTat 3099.495 kb on - strand, within yecTat 3099.825 kb on + strand, within yecTat 3099.826 kb on - strand, within yecTat 3099.826 kb on - strand, within yecTat 3099.874 kb on - strandat 3100.001 kb on - strand, within yecVat 3100.007 kb on - strand, within yecVat 3100.035 kb on - strandat 3100.072 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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3,097,972 + flhA BNILDI_15400 0.56 +0.1
3,097,974 + flhA BNILDI_15400 0.56 +0.2
3,098,223 + flhA BNILDI_15400 0.68 -0.0
3,098,291 - flhA BNILDI_15400 0.71 +1.2
3,098,644 - flhA BNILDI_15400 0.88 +1.5
3,098,646 + flhA BNILDI_15400 0.88 +0.5
3,098,784 + +0.6
3,098,820 + +0.0
3,098,860 + -3.5
3,098,892 - -0.4
3,098,892 - -1.3
3,098,904 - -1.6
3,098,912 + +1.2
3,098,912 + -2.1
3,098,915 + -1.4
3,098,916 - +0.2
3,098,968 - flhe BNILDI_15405 0.19 -0.7
3,098,968 - flhe BNILDI_15405 0.19 +0.8
3,098,968 - flhe BNILDI_15405 0.19 -1.1
3,098,968 - flhe BNILDI_15405 0.19 +0.8
3,098,973 - flhe BNILDI_15405 0.20 -0.2
3,098,979 + flhe BNILDI_15405 0.22 -1.1
3,099,252 - -1.5
3,099,314 - -1.0
3,099,319 + -0.3
3,099,371 + -1.4
3,099,487 - yecT BNILDI_15410 0.17 -0.3
3,099,495 - yecT BNILDI_15410 0.18 +0.0
3,099,825 + yecT BNILDI_15410 0.86 -0.4
3,099,826 - yecT BNILDI_15410 0.86 +0.1
3,099,826 - yecT BNILDI_15410 0.86 -0.7
3,099,874 - -0.8
3,100,001 - yecV BNILDI_15415 0.38 +0.5
3,100,007 - yecV BNILDI_15415 0.51 -0.9
3,100,035 - -0.8
3,100,072 - -0.4

Or see this region's nucleotide sequence