Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_14810 and BNILDI_14815 are separated by 190 nucleotides BNILDI_14815 and yoeJ are separated by 55 nucleotides yoeJ and yeeX are separated by 65 nucleotides
BNILDI_14810: BNILDI_14810 - IS110-like element IS621 family transposase, at 2,989,781 to 2,990,761
_14810
BNILDI_14815: BNILDI_14815 - Inner membrane protein YeeA, at 2,990,952 to 2,991,374
_14815
BNILDI_14820: yoeJ - Protein YoeJ, at 2,991,430 to 2,991,480
yoeJ
BNILDI_14825: yeeX - DUF496 domain-containing protein, at 2,991,546 to 2,991,875
yeeX
Position (kb)
2990
2991
2992 Strain fitness (log2 ratio)
-2
-1
0
1 at 2990.864 kb on + strand at 2990.864 kb on + strand at 2990.868 kb on + strand at 2991.006 kb on + strand, within BNILDI_14815 at 2991.007 kb on - strand, within BNILDI_14815 at 2991.007 kb on - strand, within BNILDI_14815 at 2991.007 kb on - strand, within BNILDI_14815 at 2991.044 kb on + strand, within BNILDI_14815 at 2991.044 kb on + strand, within BNILDI_14815 at 2991.183 kb on - strand, within BNILDI_14815 at 2991.254 kb on + strand, within BNILDI_14815 at 2991.292 kb on - strand, within BNILDI_14815 at 2991.292 kb on - strand, within BNILDI_14815 at 2991.297 kb on + strand, within BNILDI_14815 at 2991.297 kb on + strand, within BNILDI_14815 at 2991.373 kb on - strand at 2991.472 kb on + strand, within yoeJ at 2991.479 kb on - strand at 2991.542 kb on - strand at 2991.760 kb on - strand, within yeeX at 2991.821 kb on + strand, within yeeX at 2991.842 kb on + strand, within yeeX at 2991.842 kb on + strand, within yeeX at 2991.843 kb on - strand at 2991.939 kb on - strand at 2991.996 kb on + strand at 2991.997 kb on - strand at 2991.997 kb on - strand at 2992.099 kb on + strand at 2992.100 kb on - strand at 2992.117 kb on + strand at 2992.135 kb on + strand at 2992.267 kb on - strand at 2992.267 kb on - strand at 2992.277 kb on + strand at 2992.352 kb on + strand at 2992.356 kb on + strand at 2992.357 kb on - strand at 2992.357 kb on - strand at 2992.357 kb on - strand at 2992.367 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 2,990,864 + +0.7 2,990,864 + -2.0 2,990,868 + +0.4 2,991,006 + BNILDI_14815 0.13 +0.0 2,991,007 - BNILDI_14815 0.13 +0.4 2,991,007 - BNILDI_14815 0.13 +0.2 2,991,007 - BNILDI_14815 0.13 +0.6 2,991,044 + BNILDI_14815 0.22 -0.1 2,991,044 + BNILDI_14815 0.22 +0.0 2,991,183 - BNILDI_14815 0.55 +0.2 2,991,254 + BNILDI_14815 0.71 -0.4 2,991,292 - BNILDI_14815 0.80 +0.2 2,991,292 - BNILDI_14815 0.80 -0.4 2,991,297 + BNILDI_14815 0.82 +1.6 2,991,297 + BNILDI_14815 0.82 +0.6 2,991,373 - -1.1 2,991,472 + yoeJ BNILDI_14820 0.82 -0.7 2,991,479 - -1.2 2,991,542 - -0.5 2,991,760 - yeeX BNILDI_14825 0.65 +0.2 2,991,821 + yeeX BNILDI_14825 0.83 -1.5 2,991,842 + yeeX BNILDI_14825 0.90 +0.7 2,991,842 + yeeX BNILDI_14825 0.90 -0.0 2,991,843 - +0.2 2,991,939 - -0.6 2,991,996 + -0.3 2,991,997 - -0.2 2,991,997 - +0.8 2,992,099 + -0.2 2,992,100 - +0.7 2,992,117 + +0.6 2,992,135 + -0.2 2,992,267 - +1.5 2,992,267 - -0.5 2,992,277 + +1.3 2,992,352 + +1.5 2,992,356 + -0.0 2,992,357 - -0.1 2,992,357 - -1.0 2,992,357 - +1.1 2,992,367 - -0.5
Or see this region's nucleotide sequence