Strain Fitness in Escherichia coli ECRC62 around BNILDI_14815

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBNILDI_14810 and BNILDI_14815 are separated by 190 nucleotidesBNILDI_14815 and yoeJ are separated by 55 nucleotidesyoeJ and yeeX are separated by 65 nucleotides BNILDI_14810: BNILDI_14810 - IS110-like element IS621 family transposase, at 2,989,781 to 2,990,761 _14810 BNILDI_14815: BNILDI_14815 - Inner membrane protein YeeA, at 2,990,952 to 2,991,374 _14815 BNILDI_14820: yoeJ - Protein YoeJ, at 2,991,430 to 2,991,480 yoeJ BNILDI_14825: yeeX - DUF496 domain-containing protein, at 2,991,546 to 2,991,875 yeeX Position (kb) 2990 2991 2992Strain fitness (log2 ratio) -2 -1 0 1at 2990.864 kb on + strandat 2990.864 kb on + strandat 2990.868 kb on + strandat 2991.006 kb on + strand, within BNILDI_14815at 2991.007 kb on - strand, within BNILDI_14815at 2991.007 kb on - strand, within BNILDI_14815at 2991.007 kb on - strand, within BNILDI_14815at 2991.044 kb on + strand, within BNILDI_14815at 2991.044 kb on + strand, within BNILDI_14815at 2991.183 kb on - strand, within BNILDI_14815at 2991.254 kb on + strand, within BNILDI_14815at 2991.292 kb on - strand, within BNILDI_14815at 2991.292 kb on - strand, within BNILDI_14815at 2991.297 kb on + strand, within BNILDI_14815at 2991.297 kb on + strand, within BNILDI_14815at 2991.373 kb on - strandat 2991.472 kb on + strand, within yoeJat 2991.479 kb on - strandat 2991.542 kb on - strandat 2991.760 kb on - strand, within yeeXat 2991.821 kb on + strand, within yeeXat 2991.842 kb on + strand, within yeeXat 2991.842 kb on + strand, within yeeXat 2991.843 kb on - strandat 2991.939 kb on - strandat 2991.996 kb on + strandat 2991.997 kb on - strandat 2991.997 kb on - strandat 2992.099 kb on + strandat 2992.100 kb on - strandat 2992.117 kb on + strandat 2992.135 kb on + strandat 2992.267 kb on - strandat 2992.267 kb on - strandat 2992.277 kb on + strandat 2992.352 kb on + strandat 2992.356 kb on + strandat 2992.357 kb on - strandat 2992.357 kb on - strandat 2992.357 kb on - strandat 2992.367 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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2,990,864 + +0.7
2,990,864 + -2.0
2,990,868 + +0.4
2,991,006 + BNILDI_14815 0.13 +0.0
2,991,007 - BNILDI_14815 0.13 +0.4
2,991,007 - BNILDI_14815 0.13 +0.2
2,991,007 - BNILDI_14815 0.13 +0.6
2,991,044 + BNILDI_14815 0.22 -0.1
2,991,044 + BNILDI_14815 0.22 +0.0
2,991,183 - BNILDI_14815 0.55 +0.2
2,991,254 + BNILDI_14815 0.71 -0.4
2,991,292 - BNILDI_14815 0.80 +0.2
2,991,292 - BNILDI_14815 0.80 -0.4
2,991,297 + BNILDI_14815 0.82 +1.6
2,991,297 + BNILDI_14815 0.82 +0.6
2,991,373 - -1.1
2,991,472 + yoeJ BNILDI_14820 0.82 -0.7
2,991,479 - -1.2
2,991,542 - -0.5
2,991,760 - yeeX BNILDI_14825 0.65 +0.2
2,991,821 + yeeX BNILDI_14825 0.83 -1.5
2,991,842 + yeeX BNILDI_14825 0.90 +0.7
2,991,842 + yeeX BNILDI_14825 0.90 -0.0
2,991,843 - +0.2
2,991,939 - -0.6
2,991,996 + -0.3
2,991,997 - -0.2
2,991,997 - +0.8
2,992,099 + -0.2
2,992,100 - +0.7
2,992,117 + +0.6
2,992,135 + -0.2
2,992,267 - +1.5
2,992,267 - -0.5
2,992,277 + +1.3
2,992,352 + +1.5
2,992,356 + -0.0
2,992,357 - -0.1
2,992,357 - -1.0
2,992,357 - +1.1
2,992,367 - -0.5

Or see this region's nucleotide sequence