Strain Fitness in Escherichia coli ECRC62 around BNILDI_14525

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntudk and dcd are separated by 91 nucleotidesdcd and asmA are separated by 21 nucleotides BNILDI_14520: udk - uridine kinase, at 2,931,536 to 2,932,177 udk BNILDI_14525: dcd - dCTP deaminase, at 2,932,269 to 2,932,850 dcd BNILDI_14530: asmA - outer membrane assembly protein AsmA, at 2,932,872 to 2,934,725 asmA Position (kb) 2932 2933Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2931.272 kb on - strandat 2931.309 kb on + strandat 2931.368 kb on - strandat 2931.471 kb on - strandat 2931.471 kb on - strandat 2931.533 kb on + strandat 2931.533 kb on + strandat 2931.534 kb on - strandat 2931.630 kb on + strand, within udkat 2931.664 kb on - strand, within udkat 2931.683 kb on + strand, within udkat 2931.732 kb on - strand, within udkat 2931.778 kb on - strand, within udkat 2931.825 kb on - strand, within udkat 2931.825 kb on - strand, within udkat 2931.825 kb on - strand, within udkat 2931.825 kb on - strand, within udkat 2931.931 kb on + strand, within udkat 2931.932 kb on - strand, within udkat 2932.091 kb on + strand, within udkat 2932.091 kb on + strand, within udkat 2932.349 kb on + strand, within dcdat 2932.349 kb on + strand, within dcdat 2932.372 kb on + strand, within dcdat 2932.697 kb on + strand, within dcdat 2932.779 kb on + strand, within dcdat 2932.971 kb on + strandat 2932.972 kb on - strandat 2932.973 kb on + strandat 2932.973 kb on + strandat 2932.973 kb on - strandat 2932.974 kb on - strandat 2932.997 kb on + strandat 2932.998 kb on - strandat 2933.055 kb on - strandat 2933.055 kb on - strandat 2933.055 kb on - strandat 2933.146 kb on + strand, within asmAat 2933.188 kb on + strand, within asmAat 2933.189 kb on - strand, within asmAat 2933.268 kb on - strand, within asmAat 2933.309 kb on + strand, within asmAat 2933.309 kb on + strand, within asmAat 2933.311 kb on + strand, within asmAat 2933.491 kb on + strand, within asmAat 2933.492 kb on - strand, within asmA

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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2,931,272 - -1.0
2,931,309 + -0.1
2,931,368 - +0.0
2,931,471 - +0.7
2,931,471 - +0.7
2,931,533 + +0.6
2,931,533 + +0.0
2,931,534 - -0.1
2,931,630 + udk BNILDI_14520 0.15 -0.2
2,931,664 - udk BNILDI_14520 0.20 +0.6
2,931,683 + udk BNILDI_14520 0.23 -2.7
2,931,732 - udk BNILDI_14520 0.31 +0.2
2,931,778 - udk BNILDI_14520 0.38 -3.1
2,931,825 - udk BNILDI_14520 0.45 -0.5
2,931,825 - udk BNILDI_14520 0.45 -0.2
2,931,825 - udk BNILDI_14520 0.45 -0.1
2,931,825 - udk BNILDI_14520 0.45 -0.5
2,931,931 + udk BNILDI_14520 0.62 -0.0
2,931,932 - udk BNILDI_14520 0.62 -0.4
2,932,091 + udk BNILDI_14520 0.86 -1.1
2,932,091 + udk BNILDI_14520 0.86 -0.7
2,932,349 + dcd BNILDI_14525 0.14 -2.6
2,932,349 + dcd BNILDI_14525 0.14 -1.7
2,932,372 + dcd BNILDI_14525 0.18 +0.4
2,932,697 + dcd BNILDI_14525 0.74 -0.9
2,932,779 + dcd BNILDI_14525 0.88 -3.9
2,932,971 + +0.1
2,932,972 - +0.6
2,932,973 + +0.4
2,932,973 + -1.3
2,932,973 - +0.6
2,932,974 - +1.1
2,932,997 + +0.2
2,932,998 - -0.4
2,933,055 - +0.2
2,933,055 - +0.3
2,933,055 - +0.4
2,933,146 + asmA BNILDI_14530 0.15 +0.7
2,933,188 + asmA BNILDI_14530 0.17 -0.7
2,933,189 - asmA BNILDI_14530 0.17 -0.3
2,933,268 - asmA BNILDI_14530 0.21 +0.2
2,933,309 + asmA BNILDI_14530 0.24 +0.1
2,933,309 + asmA BNILDI_14530 0.24 -0.4
2,933,311 + asmA BNILDI_14530 0.24 -1.5
2,933,491 + asmA BNILDI_14530 0.33 -0.6
2,933,492 - asmA BNILDI_14530 0.33 +0.7

Or see this region's nucleotide sequence