Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt udk and dcd are separated by 91 nucleotides dcd and asmA are separated by 21 nucleotides
BNILDI_14520: udk - uridine kinase, at 2,931,536 to 2,932,177
udk
BNILDI_14525: dcd - dCTP deaminase, at 2,932,269 to 2,932,850
dcd
BNILDI_14530: asmA - outer membrane assembly protein AsmA, at 2,932,872 to 2,934,725
asmA
Position (kb)
2932
2933 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2931.272 kb on - strand at 2931.309 kb on + strand at 2931.368 kb on - strand at 2931.471 kb on - strand at 2931.471 kb on - strand at 2931.533 kb on + strand at 2931.533 kb on + strand at 2931.534 kb on - strand at 2931.630 kb on + strand, within udk at 2931.664 kb on - strand, within udk at 2931.683 kb on + strand, within udk at 2931.732 kb on - strand, within udk at 2931.778 kb on - strand, within udk at 2931.825 kb on - strand, within udk at 2931.825 kb on - strand, within udk at 2931.825 kb on - strand, within udk at 2931.825 kb on - strand, within udk at 2931.931 kb on + strand, within udk at 2931.932 kb on - strand, within udk at 2932.091 kb on + strand, within udk at 2932.091 kb on + strand, within udk at 2932.349 kb on + strand, within dcd at 2932.349 kb on + strand, within dcd at 2932.372 kb on + strand, within dcd at 2932.697 kb on + strand, within dcd at 2932.779 kb on + strand, within dcd at 2932.971 kb on + strand at 2932.972 kb on - strand at 2932.973 kb on + strand at 2932.973 kb on + strand at 2932.973 kb on - strand at 2932.974 kb on - strand at 2932.997 kb on + strand at 2932.998 kb on - strand at 2933.055 kb on - strand at 2933.055 kb on - strand at 2933.055 kb on - strand at 2933.146 kb on + strand, within asmA at 2933.188 kb on + strand, within asmA at 2933.189 kb on - strand, within asmA at 2933.268 kb on - strand, within asmA at 2933.309 kb on + strand, within asmA at 2933.309 kb on + strand, within asmA at 2933.311 kb on + strand, within asmA at 2933.491 kb on + strand, within asmA at 2933.492 kb on - strand, within asmA
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 2,931,272 - -1.0 2,931,309 + -0.1 2,931,368 - +0.0 2,931,471 - +0.7 2,931,471 - +0.7 2,931,533 + +0.6 2,931,533 + +0.0 2,931,534 - -0.1 2,931,630 + udk BNILDI_14520 0.15 -0.2 2,931,664 - udk BNILDI_14520 0.20 +0.6 2,931,683 + udk BNILDI_14520 0.23 -2.7 2,931,732 - udk BNILDI_14520 0.31 +0.2 2,931,778 - udk BNILDI_14520 0.38 -3.1 2,931,825 - udk BNILDI_14520 0.45 -0.5 2,931,825 - udk BNILDI_14520 0.45 -0.2 2,931,825 - udk BNILDI_14520 0.45 -0.1 2,931,825 - udk BNILDI_14520 0.45 -0.5 2,931,931 + udk BNILDI_14520 0.62 -0.0 2,931,932 - udk BNILDI_14520 0.62 -0.4 2,932,091 + udk BNILDI_14520 0.86 -1.1 2,932,091 + udk BNILDI_14520 0.86 -0.7 2,932,349 + dcd BNILDI_14525 0.14 -2.6 2,932,349 + dcd BNILDI_14525 0.14 -1.7 2,932,372 + dcd BNILDI_14525 0.18 +0.4 2,932,697 + dcd BNILDI_14525 0.74 -0.9 2,932,779 + dcd BNILDI_14525 0.88 -3.9 2,932,971 + +0.1 2,932,972 - +0.6 2,932,973 + +0.4 2,932,973 + -1.3 2,932,973 - +0.6 2,932,974 - +1.1 2,932,997 + +0.2 2,932,998 - -0.4 2,933,055 - +0.2 2,933,055 - +0.3 2,933,055 - +0.4 2,933,146 + asmA BNILDI_14530 0.15 +0.7 2,933,188 + asmA BNILDI_14530 0.17 -0.7 2,933,189 - asmA BNILDI_14530 0.17 -0.3 2,933,268 - asmA BNILDI_14530 0.21 +0.2 2,933,309 + asmA BNILDI_14530 0.24 +0.1 2,933,309 + asmA BNILDI_14530 0.24 -0.4 2,933,311 + asmA BNILDI_14530 0.24 -1.5 2,933,491 + asmA BNILDI_14530 0.33 -0.6 2,933,492 - asmA BNILDI_14530 0.33 +0.7
Or see this region's nucleotide sequence