Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sixA and yfcV are separated by 683 nucleotides yfcV and BNILDI_13125 are separated by 81 nucleotides BNILDI_13125 and BNILDI_13130 overlap by 4 nucleotides
BNILDI_13115: sixA - phosphohistidine phosphatase SixA, at 2,628,189 to 2,628,674
sixA
BNILDI_13120: yfcV - Uncharacterized fimbrial-like protein YfcV, at 2,629,358 to 2,629,921
yfcV
BNILDI_13125: BNILDI_13125 - fimbrial usher protein, at 2,630,003 to 2,630,920
_13125
BNILDI_13130: BNILDI_13130 - Putative outer membrane protein, at 2,630,917 to 2,632,644
_13130
Position (kb)
2629
2630 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2628.460 kb on - strand, within sixA at 2628.514 kb on + strand, within sixA at 2628.515 kb on - strand, within sixA at 2628.528 kb on + strand, within sixA at 2628.544 kb on + strand, within sixA at 2628.567 kb on - strand, within sixA at 2628.573 kb on - strand, within sixA at 2628.701 kb on + strand at 2628.976 kb on - strand at 2629.634 kb on - strand, within yfcV at 2629.673 kb on + strand, within yfcV at 2629.801 kb on + strand, within yfcV at 2629.894 kb on + strand at 2629.910 kb on - strand at 2629.914 kb on - strand at 2630.074 kb on + strand at 2630.128 kb on - strand, within BNILDI_13125 at 2630.193 kb on - strand, within BNILDI_13125 at 2630.211 kb on + strand, within BNILDI_13125 at 2630.242 kb on + strand, within BNILDI_13125 at 2630.246 kb on + strand, within BNILDI_13125 at 2630.253 kb on - strand, within BNILDI_13125 at 2630.283 kb on - strand, within BNILDI_13125 at 2630.283 kb on - strand, within BNILDI_13125 at 2630.405 kb on - strand, within BNILDI_13125 at 2630.453 kb on + strand, within BNILDI_13125 at 2630.462 kb on + strand, within BNILDI_13125 at 2630.464 kb on + strand, within BNILDI_13125 at 2630.464 kb on + strand, within BNILDI_13125 at 2630.465 kb on - strand, within BNILDI_13125 at 2630.578 kb on + strand, within BNILDI_13125 at 2630.650 kb on + strand, within BNILDI_13125 at 2630.650 kb on + strand, within BNILDI_13125 at 2630.654 kb on + strand, within BNILDI_13125 at 2630.655 kb on - strand, within BNILDI_13125 at 2630.732 kb on + strand, within BNILDI_13125 at 2630.732 kb on + strand, within BNILDI_13125 at 2630.732 kb on + strand, within BNILDI_13125 at 2630.733 kb on - strand, within BNILDI_13125 at 2630.818 kb on + strand, within BNILDI_13125 at 2630.819 kb on - strand, within BNILDI_13125
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 2,628,460 - sixA BNILDI_13115 0.56 -1.7 2,628,514 + sixA BNILDI_13115 0.67 -1.5 2,628,515 - sixA BNILDI_13115 0.67 -0.8 2,628,528 + sixA BNILDI_13115 0.70 -2.0 2,628,544 + sixA BNILDI_13115 0.73 -2.2 2,628,567 - sixA BNILDI_13115 0.78 -2.0 2,628,573 - sixA BNILDI_13115 0.79 -2.5 2,628,701 + +0.5 2,628,976 - -1.8 2,629,634 - yfcV BNILDI_13120 0.49 +0.0 2,629,673 + yfcV BNILDI_13120 0.56 +0.3 2,629,801 + yfcV BNILDI_13120 0.79 -1.5 2,629,894 + +0.5 2,629,910 - -1.1 2,629,914 - -0.1 2,630,074 + -1.4 2,630,128 - BNILDI_13125 0.14 -0.1 2,630,193 - BNILDI_13125 0.21 -0.1 2,630,211 + BNILDI_13125 0.23 +0.5 2,630,242 + BNILDI_13125 0.26 +0.6 2,630,246 + BNILDI_13125 0.26 -0.5 2,630,253 - BNILDI_13125 0.27 +0.3 2,630,283 - BNILDI_13125 0.31 -1.8 2,630,283 - BNILDI_13125 0.31 -0.4 2,630,405 - BNILDI_13125 0.44 +0.0 2,630,453 + BNILDI_13125 0.49 -0.1 2,630,462 + BNILDI_13125 0.50 +0.5 2,630,464 + BNILDI_13125 0.50 +1.3 2,630,464 + BNILDI_13125 0.50 -0.2 2,630,465 - BNILDI_13125 0.50 +1.9 2,630,578 + BNILDI_13125 0.63 +0.4 2,630,650 + BNILDI_13125 0.70 -2.6 2,630,650 + BNILDI_13125 0.70 -0.1 2,630,654 + BNILDI_13125 0.71 +0.5 2,630,655 - BNILDI_13125 0.71 -0.4 2,630,732 + BNILDI_13125 0.79 +0.9 2,630,732 + BNILDI_13125 0.79 +0.0 2,630,732 + BNILDI_13125 0.79 +0.6 2,630,733 - BNILDI_13125 0.80 +0.3 2,630,818 + BNILDI_13125 0.89 -0.8 2,630,819 - BNILDI_13125 0.89 +0.0
Or see this region's nucleotide sequence