Strain Fitness in Escherichia coli ECRC62 around BNILDI_13120

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsixA and yfcV are separated by 683 nucleotidesyfcV and BNILDI_13125 are separated by 81 nucleotidesBNILDI_13125 and BNILDI_13130 overlap by 4 nucleotides BNILDI_13115: sixA - phosphohistidine phosphatase SixA, at 2,628,189 to 2,628,674 sixA BNILDI_13120: yfcV - Uncharacterized fimbrial-like protein YfcV, at 2,629,358 to 2,629,921 yfcV BNILDI_13125: BNILDI_13125 - fimbrial usher protein, at 2,630,003 to 2,630,920 _13125 BNILDI_13130: BNILDI_13130 - Putative outer membrane protein, at 2,630,917 to 2,632,644 _13130 Position (kb) 2629 2630Strain fitness (log2 ratio) -2 -1 0 1 2at 2628.460 kb on - strand, within sixAat 2628.514 kb on + strand, within sixAat 2628.515 kb on - strand, within sixAat 2628.528 kb on + strand, within sixAat 2628.544 kb on + strand, within sixAat 2628.567 kb on - strand, within sixAat 2628.573 kb on - strand, within sixAat 2628.701 kb on + strandat 2628.976 kb on - strandat 2629.634 kb on - strand, within yfcVat 2629.673 kb on + strand, within yfcVat 2629.801 kb on + strand, within yfcVat 2629.894 kb on + strandat 2629.910 kb on - strandat 2629.914 kb on - strandat 2630.074 kb on + strandat 2630.128 kb on - strand, within BNILDI_13125at 2630.193 kb on - strand, within BNILDI_13125at 2630.211 kb on + strand, within BNILDI_13125at 2630.242 kb on + strand, within BNILDI_13125at 2630.246 kb on + strand, within BNILDI_13125at 2630.253 kb on - strand, within BNILDI_13125at 2630.283 kb on - strand, within BNILDI_13125at 2630.283 kb on - strand, within BNILDI_13125at 2630.405 kb on - strand, within BNILDI_13125at 2630.453 kb on + strand, within BNILDI_13125at 2630.462 kb on + strand, within BNILDI_13125at 2630.464 kb on + strand, within BNILDI_13125at 2630.464 kb on + strand, within BNILDI_13125at 2630.465 kb on - strand, within BNILDI_13125at 2630.578 kb on + strand, within BNILDI_13125at 2630.650 kb on + strand, within BNILDI_13125at 2630.650 kb on + strand, within BNILDI_13125at 2630.654 kb on + strand, within BNILDI_13125at 2630.655 kb on - strand, within BNILDI_13125at 2630.732 kb on + strand, within BNILDI_13125at 2630.732 kb on + strand, within BNILDI_13125at 2630.732 kb on + strand, within BNILDI_13125at 2630.733 kb on - strand, within BNILDI_13125at 2630.818 kb on + strand, within BNILDI_13125at 2630.819 kb on - strand, within BNILDI_13125

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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2,628,460 - sixA BNILDI_13115 0.56 -1.7
2,628,514 + sixA BNILDI_13115 0.67 -1.5
2,628,515 - sixA BNILDI_13115 0.67 -0.8
2,628,528 + sixA BNILDI_13115 0.70 -2.0
2,628,544 + sixA BNILDI_13115 0.73 -2.2
2,628,567 - sixA BNILDI_13115 0.78 -2.0
2,628,573 - sixA BNILDI_13115 0.79 -2.5
2,628,701 + +0.5
2,628,976 - -1.8
2,629,634 - yfcV BNILDI_13120 0.49 +0.0
2,629,673 + yfcV BNILDI_13120 0.56 +0.3
2,629,801 + yfcV BNILDI_13120 0.79 -1.5
2,629,894 + +0.5
2,629,910 - -1.1
2,629,914 - -0.1
2,630,074 + -1.4
2,630,128 - BNILDI_13125 0.14 -0.1
2,630,193 - BNILDI_13125 0.21 -0.1
2,630,211 + BNILDI_13125 0.23 +0.5
2,630,242 + BNILDI_13125 0.26 +0.6
2,630,246 + BNILDI_13125 0.26 -0.5
2,630,253 - BNILDI_13125 0.27 +0.3
2,630,283 - BNILDI_13125 0.31 -1.8
2,630,283 - BNILDI_13125 0.31 -0.4
2,630,405 - BNILDI_13125 0.44 +0.0
2,630,453 + BNILDI_13125 0.49 -0.1
2,630,462 + BNILDI_13125 0.50 +0.5
2,630,464 + BNILDI_13125 0.50 +1.3
2,630,464 + BNILDI_13125 0.50 -0.2
2,630,465 - BNILDI_13125 0.50 +1.9
2,630,578 + BNILDI_13125 0.63 +0.4
2,630,650 + BNILDI_13125 0.70 -2.6
2,630,650 + BNILDI_13125 0.70 -0.1
2,630,654 + BNILDI_13125 0.71 +0.5
2,630,655 - BNILDI_13125 0.71 -0.4
2,630,732 + BNILDI_13125 0.79 +0.9
2,630,732 + BNILDI_13125 0.79 +0.0
2,630,732 + BNILDI_13125 0.79 +0.6
2,630,733 - BNILDI_13125 0.80 +0.3
2,630,818 + BNILDI_13125 0.89 -0.8
2,630,819 - BNILDI_13125 0.89 +0.0

Or see this region's nucleotide sequence