Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_12605 and BNILDI_12610 are separated by 140 nucleotides BNILDI_12610 and BNILDI_12615 are separated by 24 nucleotides BNILDI_12615 and eutC overlap by 20 nucleotides eutC and eutL are separated by 9 nucleotides eutL and eutK are separated by 12 nucleotides
BNILDI_12605: BNILDI_12605 - Prophage integrase IntZ, at 2,529,878 to 2,530,939
_12605
BNILDI_12610: BNILDI_12610 - hypothetical protein, at 2,531,080 to 2,531,247
_12610
BNILDI_12615: BNILDI_12615 - Ethanolamine ammonia lyase large subunit, at 2,531,272 to 2,531,673
_12615
BNILDI_12620: eutC - ethanolamine ammonia-lyase subunit beta, at 2,531,654 to 2,532,541
eutC
BNILDI_12625: eutL - ethanolamine utilization microcompartment protein EutL, at 2,532,551 to 2,533,210
eutL
BNILDI_12630: eutK - ethanolamine utilization microcompartment protein EutK, at 2,533,223 to 2,533,723
eutK
Position (kb)
2531
2532
2533 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2530.700 kb on - strand, within BNILDI_12605 at 2530.832 kb on - strand, within BNILDI_12605 at 2530.960 kb on - strand at 2530.960 kb on - strand at 2531.022 kb on + strand at 2531.022 kb on + strand at 2531.303 kb on + strand at 2531.303 kb on + strand at 2531.304 kb on - strand at 2531.304 kb on - strand at 2531.304 kb on - strand at 2531.304 kb on - strand at 2531.321 kb on + strand, within BNILDI_12615 at 2531.322 kb on - strand, within BNILDI_12615 at 2531.567 kb on - strand, within BNILDI_12615 at 2531.567 kb on - strand, within BNILDI_12615 at 2531.683 kb on - strand at 2531.683 kb on - strand at 2531.851 kb on - strand, within eutC at 2531.853 kb on + strand, within eutC at 2532.022 kb on - strand, within eutC at 2532.136 kb on - strand, within eutC at 2532.136 kb on - strand, within eutC at 2532.374 kb on + strand, within eutC at 2532.375 kb on - strand, within eutC at 2532.394 kb on + strand, within eutC at 2532.427 kb on + strand, within eutC at 2532.428 kb on - strand, within eutC at 2532.428 kb on - strand, within eutC at 2532.428 kb on - strand, within eutC at 2532.428 kb on - strand, within eutC at 2532.428 kb on - strand, within eutC at 2532.500 kb on - strand at 2532.500 kb on - strand at 2532.500 kb on - strand at 2532.500 kb on - strand at 2532.562 kb on - strand at 2532.634 kb on - strand, within eutL at 2532.695 kb on + strand, within eutL at 2532.695 kb on + strand, within eutL at 2532.695 kb on + strand, within eutL at 2532.695 kb on + strand, within eutL at 2532.741 kb on + strand, within eutL at 2532.742 kb on + strand, within eutL at 2532.742 kb on - strand, within eutL at 2532.742 kb on - strand, within eutL at 2532.742 kb on - strand, within eutL at 2532.742 kb on - strand, within eutL at 2532.742 kb on - strand, within eutL at 2532.759 kb on - strand, within eutL at 2532.953 kb on + strand, within eutL at 2532.954 kb on - strand, within eutL at 2532.954 kb on - strand, within eutL at 2533.028 kb on + strand, within eutL at 2533.076 kb on + strand, within eutL at 2533.304 kb on - strand, within eutK
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 2,530,700 - BNILDI_12605 0.77 +0.1 2,530,832 - BNILDI_12605 0.90 +0.2 2,530,960 - -0.3 2,530,960 - -0.1 2,531,022 + -3.7 2,531,022 + +0.4 2,531,303 + -0.2 2,531,303 + +0.5 2,531,304 - +0.1 2,531,304 - -0.1 2,531,304 - -0.1 2,531,304 - -1.4 2,531,321 + BNILDI_12615 0.12 -1.0 2,531,322 - BNILDI_12615 0.12 -0.1 2,531,567 - BNILDI_12615 0.73 -0.9 2,531,567 - BNILDI_12615 0.73 +0.3 2,531,683 - -0.5 2,531,683 - -0.9 2,531,851 - eutC BNILDI_12620 0.22 -1.2 2,531,853 + eutC BNILDI_12620 0.22 -1.8 2,532,022 - eutC BNILDI_12620 0.41 +0.1 2,532,136 - eutC BNILDI_12620 0.54 -0.9 2,532,136 - eutC BNILDI_12620 0.54 -1.4 2,532,374 + eutC BNILDI_12620 0.81 +1.2 2,532,375 - eutC BNILDI_12620 0.81 +0.8 2,532,394 + eutC BNILDI_12620 0.83 -0.4 2,532,427 + eutC BNILDI_12620 0.87 +0.2 2,532,428 - eutC BNILDI_12620 0.87 +0.0 2,532,428 - eutC BNILDI_12620 0.87 -1.6 2,532,428 - eutC BNILDI_12620 0.87 +0.4 2,532,428 - eutC BNILDI_12620 0.87 -0.2 2,532,428 - eutC BNILDI_12620 0.87 -0.2 2,532,500 - -0.1 2,532,500 - -0.3 2,532,500 - +0.2 2,532,500 - -0.9 2,532,562 - +0.8 2,532,634 - eutL BNILDI_12625 0.13 -1.8 2,532,695 + eutL BNILDI_12625 0.22 +1.2 2,532,695 + eutL BNILDI_12625 0.22 +0.6 2,532,695 + eutL BNILDI_12625 0.22 -0.9 2,532,695 + eutL BNILDI_12625 0.22 -1.6 2,532,741 + eutL BNILDI_12625 0.29 -0.4 2,532,742 + eutL BNILDI_12625 0.29 -0.4 2,532,742 - eutL BNILDI_12625 0.29 +0.4 2,532,742 - eutL BNILDI_12625 0.29 +0.8 2,532,742 - eutL BNILDI_12625 0.29 -1.2 2,532,742 - eutL BNILDI_12625 0.29 +0.0 2,532,742 - eutL BNILDI_12625 0.29 -0.3 2,532,759 - eutL BNILDI_12625 0.32 +0.5 2,532,953 + eutL BNILDI_12625 0.61 +0.7 2,532,954 - eutL BNILDI_12625 0.61 -0.2 2,532,954 - eutL BNILDI_12625 0.61 -0.9 2,533,028 + eutL BNILDI_12625 0.72 +0.1 2,533,076 + eutL BNILDI_12625 0.80 +0.1 2,533,304 - eutK BNILDI_12630 0.16 +0.3
Or see this region's nucleotide sequence